Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq968 100 6e-16 seq1337 89.7 1e-12 >seq968 Length=289341 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||| ||||| || ||||||||||||||||| || ||| Sbjct 48828 TTACCAGCAAAAATCAGACGCTGTTGGTCAGGGGGGATTCCTTCTTTATCTTGGATCTTA 48887 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| || || || ||||| || | || ||||| || |||||||| || ||||| Sbjct 48888 GCTTTGACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTC 48947 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 || || || | || |||||||| Sbjct 48948 AAGGTCTTCACGAAGATCTGCAT 48970 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||| || || ||||| ||||| | | |||||||| || || |||||||||| Sbjct 46503 CATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCTT 46562 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| ||||| ||||| || || ||||| || | || ||||| || |||| Sbjct 46563 TGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAA 46622 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || ||||| || || || | || |||||||| Sbjct 46623 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 >seq1337 Length=66774 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||| || ||||||||| ||| ||||| ||| || || || | ||| || || Sbjct 40758 CCTTCTTTGTCCTGTATTTTAGCTTTCACATTCTCTATCGAGTCAGAAGGTTCAACCTCG 40699 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||||||||||||| ||||| ||||| | ||||||||||| || Sbjct 40698 AGGGTAATGGTTTTACCCGTTAAGGTTTTCACGAATATCTGCATGTT 40652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984415670385000