Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq968 109 1e-18 seq1337 93.3 8e-14 >seq968 Length=289341 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | |||||||||||| || ||||||||||||||||| || ||| Sbjct 48828 TTACCAGCAAAAATCAGACGCTGTTGGTCAGGGGGGATTCCTTCTTTATCTTGGATCTTA 48887 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| || || || | ||| || | || ||||| || |||||||| || ||||| Sbjct 48888 GCTTTGACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTC 48947 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 || || || | ||| |||||||| Sbjct 48948 AAGGTCTTCACGAAGATCTGCAT 48970 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| || || || || || | |||||||||||| ||||| |||||||| | Sbjct 47744 CGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGGATTCCTTCCT 47803 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 ||||||| || ||| ||| ||||| ||| | || || | || ||||| ||||| | Sbjct 47804 TATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACTTCCAGAGTGA 47863 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| || || || || || | ||| || ||||| Sbjct 47864 TTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| ||||| || | | |||||||||||| || ||||| ||||| ||||| ||||| Sbjct 46915 TTACCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCTTGGATTTTC 46974 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||| || || | ||| || | || ||||| || |||||||| || || || Sbjct 46975 GCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCTGTC 47034 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 || ||||| | ||| |||||||| Sbjct 47035 AAGGTTTTGACGAAGATCTGCAT 47057 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| |||| | || || || | ||| | ||| || ||| || ||||| Sbjct 46433 CCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTC 46492 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || ||||| || || ||||| || || | | ||||| || || || Sbjct 46493 AGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGA 46552 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| ||||| ||||| ||||| || || | ||| || | || ||| Sbjct 46553 ATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACT 46612 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || ||||| || || || | ||| |||||||| Sbjct 46613 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 >seq1337 Length=66774 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||| || ||||||||| ||| ||||| ||| | || || | ||| || || Sbjct 40758 CCTTCTTTGTCCTGTATTTTAGCTTTCACATTCTCTATCGAGTCAGAAGGTTCAACCTCG 40699 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 || |||||||||||||| ||||| ||||| | |||||||||||| || ||||| Sbjct 40698 AGGGTAATGGTTTTACCCGTTAAGGTTTTCACGAATATCTGCATGTTGCTATAA 40645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905078297580000