Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq968 143 2e-29 seq1485 111 1e-19 >seq968 Length=289341 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || | || || || || ||||| |||||||| || |||| | Sbjct 46659 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGA-GCCATC 46601 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | ||||| || |||||||||||||||||||| ||||||||||| Sbjct 46600 CGATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCA 46541 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| ||||||| || || || ||| |||||||| | | || ||||| || Sbjct 46540 ACAACGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAA 46481 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || || |||||||| || || || | ||||| Sbjct 46480 CATTCAGAAGGAGTCAACTCTTCACTTGGTCCTGAGACTGAGAGGAGG 46433 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || ||||| || || || ||||| || | | Sbjct 47900 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCT 47841 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||||| || ||| ||||||||||| || |||||||| || ||||| ||| Sbjct 47840 GACTCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCAA 47781 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| ||||| || || || ||||| |||| | | ||||| ||| Sbjct 47780 CAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAAC 47721 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| ||||| || || ||||||||| | ||| | || |||||| Sbjct 47720 ATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACTCCGAGGAGGC 47673 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || |||||||| || || ||||| || | | Sbjct 47672 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTCT 47613 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || |||| || | ||| || || ||||| || ||||| || ||||| || Sbjct 47612 GACTCGATCGAGAACGTCAAGGCCAAA-ATTCAGGACAAGGAGGGAATCCCACCCGACCA 47554 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||| ||||| ||||||||||| || ||| || || || || Sbjct 47553 ACAAAGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTACAA 47494 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 47493 TATCCAAAAGGAGTCAACTCTCCA 47470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | ||||| | || || || || ||||| |||||||| || |||| | Sbjct 47057 ATGCAGATCTTCGTCAAAACCTTGACAGGCAAGACCATTACCCTCGAAGTTGA-GCCATC 46999 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | ||||| || |||||||||||||| ||||| || || || || Sbjct 46998 CGATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAGGGAATCCCCCCTGACCA 46939 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 ||| ||| ||||||||||||| || Sbjct 46938 ACAGCGTCTGATCTTTGCCGGTAA 46915 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || | || || || || ||||| |||||||| || |||| | Sbjct 48970 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGA-GCCATC 48912 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || ||| ||||||||||| ||||||||||| || || || || Sbjct 48911 CGATTCGATCGAGAACGTCAAAGCTAAGATCCAAGATAAAGAAGGAATCCCCCCTGACCA 48852 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 ||| ||| |||| ||||| || || Sbjct 48851 ACAGCGTCTGATTTTTGCTGGTAA 48828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || || || | || || || | | Sbjct 47444 ATGCAGATCTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCGTCT 47385 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| |||||||| |||||||| ||||| || || || ||| Sbjct 47384 GACTCTATTGAAAATGTGAAAGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAA 47325 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| ||||||||||||| Sbjct 47324 CAGCGTCTGATCTTTGCCGG 47305 >seq1485 Length=353179 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | ||||| || || ||||| || || || || || || || | | Sbjct 325071 GATGCAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAG 325130 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| || | |||| || || ||||| |||||||||||||| || || || ||||| Sbjct 325131 CGACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCA 325190 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||| ||||| || ||||| || ||| ||| | | || || || Sbjct 325191 ACAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAA 325250 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 ||| || || ||| || || |||||||||||| Sbjct 325251 CATCCAGAAAGAAAGCACGCTGCACTTGGTGTTG 325284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868919028000