Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq968 118 7e-22 seq1485 104 2e-17 >seq968 Length=289341 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| |||| |||||||||| ||||| || ||||||||||||||| || || Sbjct 46432 TCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACT 46491 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || |||| |||| |||| ||||| || ||||||||||| ||||| || || | || Sbjct 46492 CAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGG 46551 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || || ||||| | ||||| || ||| | ||||| || | ||| || Sbjct 46552 AATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAAC 46611 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || | |||||| || ||||||||||| Sbjct 46612 TTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| |||| ||| | ||| || || | || |||||| || || || ||||| Sbjct 47444 TTCCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCAC 47503 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | || | || ||||| || || ||||||||||||| || ||| ||||| | | Sbjct 47504 TCAGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTG 47563 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | ||||| |||||| | ||||| ||| | ||| | Sbjct 47564 GGATTCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAA 47623 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | || || || ||||| || || ||||| ||||||||||||||| Sbjct 47624 CTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCATG 47673 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| || || |||||||| || || ||| | | | || Sbjct 47689 AGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTAAGGGTTCTGCCGTCC 47748 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||||||||||| || ||||| | || | || ||||| || Sbjct 47749 TCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGGATTCCTTCCTTATCT 47808 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | ||||||| ||| | ||| || || | || || || Sbjct 47809 TGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACTTCCAGAGTGATTGTT 47868 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || | ||||| || ||||| |||||| Sbjct 47869 TTTCCTGTCAAAGTCTTGACGAAGATTTGCATG 47901 >seq1485 Length=353179 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34761 ACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCT 34820 |||||| |||| ||| | ||||| || ||||| ||||| ||||| ||| | || Sbjct 325288 ACCTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGAC 325229 Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| || || ||||| ||||||||||| || || || || ||| | || | || || | Sbjct 325228 CATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTT 325169 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || || || || | | || || || | | |||||| || | ||| | Sbjct 325168 TGTCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGA 325109 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| ||||||||||| || ||||| || ||||| Sbjct 325108 TTGTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325672556156900