Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2120 356 2e-92 seq359 143 2e-28 seq1855 129 4e-24 >seq2120 Length=165649 Score = 356 bits (394), Expect = 2e-92 Identities = 972/1462 (66%), Gaps = 41/1462 (3%) Strand=Plus/Minus Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||||||||||| | ||||||||| || || ||||| || | || || | ||||| Sbjct 99732 AATACCATTGGCATTGACATCAAATGTTACCTCTATTTGTGGAATACCCCTTGGGGCAGG 99673 Query 281500 TGGGATCCCTTCCAAATTAAA-TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558 | || || | || | || || || ||| ||| || ||||| || | | || || Sbjct 99672 AAGAATGCCATGCAGGTGGAACTGCCCCAAGAG-ATTGTTGTCTTTTGTCATTGCTCTTT 99614 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT---TATCTGAATAAGTTGTAAATA 281615 | || || ||| || || | || ||| || | | |||| |||||||| |||| Sbjct 99613 CTCCTTCATAAACCTGAAT-GCAA--ACACTTGGCTGTCTATCCTGGTAAGTTGTGAATA 99557 Query 281616 CTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 281675 | | || || || || | | |||||| | || | | ||||||| |||| Sbjct 99556 TCTTTGTTTCATTGATTGGTATAGCAGAGTTTCTCTTGATGAGTGTAGTCATAACTCCAC 99497 Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735 | || ||||||| || | |||||| ||||||||||||| ||| | || | |||| || Sbjct 99496 CTGCAGTTTCTATTCCCAAAGAAAGTGGAGTGACATCAATTAGAAGCATTTGCTGAATTT 99437 Query 281736 TTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 |||| | | ||| | |||||| |||||| || |||||||||||||| |||| Sbjct 99436 CTTCACTTTTGTTGCCAGATAAAATAGCACCTTGAACTGCTGCACCATATGCAACTGCTT 99377 Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855 |||| ||||| | ||| ||| || | | || | ||| | | || ||||||||| Sbjct 99376 CATCTGGATTTATGCTTTTATTGAGCTCTCTATTCTGGAACATTTCTGCAAGAAGTTGCT 99317 Query 281856 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 ||||| || || |||| ||| ||||||||||| ||||| ||||| | ||| | | Sbjct 99316 GAACCTTTGGGATTCGAGTTGAGCCTCCAACTAAAACAATATCATGGA--TGTTTTCGCT 99259 Query 281916 CCAGTTT--TGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTC 281973 | || || ||| | | | |||| ||| ||||| || | |||| ||||| Sbjct 99258 CTTGTACCCTGCATCATCAAGAGCCTTTTGAACTGGTTCCAGTGTTTCCTTAAATAAGTC 99199 Query 281974 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 282031 | ||| || || || ||||| |||| || | | || | || || || || || | Sbjct 99198 TACACACAGATCCTCAAATTTTGCTC--GTGATATTGTTGTGTAAAAGTCCATGCCATTT 99141 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 || |||||||| || || | || |||||| || || || || | ||| || Sbjct 99140 TGCAGAGAATCAAGCTCTATTGAAGCTTGAGTGCTGGATGAAAGAGCCCTTTTGGCCTTC 99081 Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA-AATCTGTTTTATA 282150 || ||| || | ||| || | ||| ||| || |||| ||| | | | Sbjct 99080 TCTGCTGCAGTTCGCAGTTGTCTCATGGCAC--GCTTGTT-ATTCTGAATATCCTCTCCT 99024 Query 282151 T--TTTCTCTTGAAATCTTCAACACACCATGTTA-CAAGACGATTATCAAAATCTTCACC 282207 ||||| |||||||| | ||| | | || | | | | ||| ||||||||||| || Sbjct 99023 GCCTTTCTTTTGAAATCCTGGACA-AGAAAGTCAACCATTCTATTGTCAAAATCTTCTCC 98965 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267 ||||| | || || || || || | | | |||| || | ||||| |||| | ||| Sbjct 98964 GCCCAAATGCGTGTTACCAGAGGTGGATTTGACTTCAAATATACCATCATCAATTGTCAA 98905 Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 | | |||||| || |||||||| | ||||||||||| ||||| || ||| Sbjct 98904 GATGGAGACATCAAATGTCCCACCACCTAGGTCAAAAATAAGAACATTGCGCTCACGGTC 98845 Query 282328 TTGG---------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 282378 ||| || || || || ||||| |||| |||||| || ||||||||||| || Sbjct 98844 TTGACCTTTTGATTTCTTGTCCAGCCCATATGCAATAGCAGCCGCTGTTGGTTCATTGAT 98785 Query 282379 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 282438 ||||| | |||||||| ||||| || ||| ||||||||||||||||| | ||||| Sbjct 98784 GATTCTAAGGACATTAAGTCCAGCTATAACTCCAGCATCTTTAGTGGCTTGGCGCTGTGA 98725 Query 282439 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC--TTCTTTTCCAA-TATA 282495 ||| || ||||||||||||||||||| ||| |||||| | || | | || ||| Sbjct 98724 ATCATTGAAATATGCAGGAACAGTAACAACTGCATCT-TCACAAGGCCCACCTAAGTATG 98666 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 | | | ||||||||||||||| || | ||||| ||| | |||||||| ||||||| || | Sbjct 98665 A-CTC-TGCTGTTTGTTTCATCTTCCCTAAAACCATGGCTGAAATTTCTTCTGGATAAAA 98608 Query 282556 TTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 282615 | | | || || || | |||||||| ||||| | ||| | |||| Sbjct 98607 TGACCTTTTTTGTCCTTTGTAGGTTACTTCAATTCGGGGTTTGTCTCCATCTGATGTAAC 98548 Query 282616 TTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 282675 ||| || ||||||| ||| || ||||| | |||| | | | ||| ||||| Sbjct 98547 TTTGAAAGGCCAATGAGCCATGTCCTCTTGAATTGATGCATCATCATACTTTCTCCCAAT 98488 Query 282676 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGC 282735 ||| | || |||||||| | ||| || || || | ||| || | ||| || | Sbjct 98487 TAACCTCTTAGCATCAAACACAGTGTTTTGAGGGTTCAACGCACTCTGTTGTTTTGCAGA 98428 Query 282736 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT-TAC 282794 ||||||| ||| | ||| || | ||||| ||||| ||||| || | || | | Sbjct 98427 TTCTCCAACAAGACGATCTACATCAGAAAATGCCACATAACTGGGAGTAGTTCTATATCC 98368 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | || ||||| ||||| || |||||||| |||||||| | || ||||||||||| | | Sbjct 98367 CATG-TCATTTGCAATGATCTCAACTTTTCCATTTTGGTACACTCCTACACAACTGTATG 98309 Query 282855 TTGTTCCTAAATCAATACCAAT 282876 |||| || | || || ||||| Sbjct 98308 TTGTACCGAGGTCTATGCCAAT 98287 >seq359 Length=215225 Score = 143 bits (158), Expect = 2e-28 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 |||| |||| ||| | |||| || |||||| | |||||| ||| |||||||| | | Sbjct 175924 ACTTCAAAAACTCCGTTATCAATAGTCAAAAGGGACACATCAAAGGTACCACCACCAAGA 175865 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 ||||| | ||| | ||| ||||| | || || || |||| ||| || |||| |||| Sbjct 175864 TCAAACACAAGGATATT--TTTCTCTCCCTCC-TTCTTGTCAATACCGTAGGCAATAGCA 175808 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || || || || || ||||| || |||| || || ||||||||||| ||| ||||| Sbjct 175807 GCGGCGGTGGGCTCGTTAATGATCCTCATTACGTTGAGACCAGCAATCACTCCAGCATCC 175748 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || ||||| | ||| | ||||| || || ||||| ||||| | ||||| | || Sbjct 175747 TTGGTAGCTTGACGTTGAGCGTCGTTGAAGTAGGCAGGGACAGTGACGACGGCGTTCTTT 175688 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCAT 282516 || || ||||| || ||||| ||||||| ||||| Sbjct 175687 ACCTCCTTTCCGATGTAAGCTTCCGCTGTTTCCTTCAT 175650 >seq1855 Length=164765 Score = 129 bits (142), Expect = 4e-24 Identities = 271/397 (68%), Gaps = 18/397 (5%) Strand=Plus/Minus Query 281418 TATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTT 281477 ||||| | || | || || |||||||| ||||| || | || || || ||||| || | Sbjct 27159 TATCAACAGCGGAGACGTTCAGAATACCGTTGGCGTCTACGTCGAAAGTAACTTCGATCT 27100 Query 281478 GAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTAT 281537 |||| || ||||| ||||||||||||| || | | || |||| || | || | Sbjct 27099 GAGGAACTCCTCTGGGAGCAGGTGGGATTCCGGAGAGCTCGAACTTTCCGAGGATGTTGT 27040 Query 281538 TATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTA 281596 |||| || || | ||| ||||||||| | | |||||| ||| || | | ||| ||| Sbjct 27039 TATCCTTGGTCATAGCTCGCTCACCCTCGTACACTTGGATGAGT-ACACCGGGTTGGTTA 26981 Query 281597 TCTGAATAAGTTGTAAA-----TACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTAT 281651 || | || || || || |||||| |||| | || || || | |||||| | Sbjct 26980 TCAGCGTAGGTGGTGAACTTCTGACTCTG--TTTTGT---GGGGATGGTGGCGTTTCTCT 26926 Query 281652 CAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACAT 281711 |||| |||||| | ||| ||||| || || | ||| || || ||||||| |||| Sbjct 26925 TGATAAGGGCGGTCATGACACCGCCAGCGGTCTCAATACCTAGGGAGAGAGGAGCCACAT 26866 Query 281712 CAACTAGGACAATATTTTGAAGTTTTTCATCAG-TTTG--ACCAACAAGAATAGCTGCTT 281768 ||| || | || || |||| ||| |||| |||| |||| || || || |||| Sbjct 26865 CAAGGAGAAGAAGATCCTGAA---CTTCCTCAGATTTGTCACCAGACAGGATGGCAGCTT 26809 Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 281805 | | |||||| || || |||||||| || ||||| || Sbjct 26808 GGACAGCAGCTCCGTAGGCAACAGCCTCGTCAGGGTT 26772 Score = 118 bits (130), Expect = 8e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || ||||| || || | ||||| ||||| || || || || |||| | ||| Sbjct 25846 TTCTTGTCCAGACCGTAGGCGATGGCAGCGGCAGTGGGCTCGTTGATGATTCGGAGAACG 25787 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| ||| ||||| || ||||| |||| || |||||||| || || Sbjct 25786 TTAAGTCCAGCAATCACTCCAGCATCCTTGGTGGCCTGTCGCTGAGAATCGTTGAAGTAA 25727 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || ||||||| ||||||||||||||| ||||||| || || || || | Sbjct 25726 GCTGGGACAGTAACAACGGCATCTGTTACGGTCTTTCCAAGGTAGGCTTCAGCGGTCTCC 25667 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 |||||||| | | ||||| || || || | ||| Sbjct 25666 TTCATTTTTCCGAGGATCATGGAAGAGATCTCTTC 25632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740380011552600