Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq968 176 9e-39 seq1485 125 1e-23 seq1282 125 1e-23 >seq968 Length=289341 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || || || ||||| || || |||||||| || || || |||||| Sbjct 47674 CCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTA 47733 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| ||||| || ||||| || || || ||||| ||||| ||||| || || || Sbjct 47734 AGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGG 47793 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||||||||| ||||| ||||| |||||||| |||| ||| ||| || ||| Sbjct 47794 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACT 47853 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || || || |||||||| ||||| || || || ||||| Sbjct 47854 TCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||||| Sbjct 49215 CCTGCAAAGATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGAC 49274 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| | || ||||| || || || ||||| ||||| || |||| Sbjct 49275 TTAACGTTCTCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGA 49334 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 49335 GTCTTAACGAAAATCTGCATT 49355 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||||||||| ||||| || || || ||||| ||||| || ||||| || Sbjct 48089 TTACCTGCAAAGATTAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGAATTTTG 48148 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || |||| ||| ||| || ||||| | ||| || || || |||||| Sbjct 48149 GCCTTGACGTTCTCGATCGAGTCAGAAGGCTCCACTTCGAGAGTGATAGTTTTTCCTGTC 48208 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || ||||| Sbjct 48209 AAAGTCTTGACGAAGATTTGCAT 48231 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | ||||| || || || ||||| || || || || ||||| ||| Sbjct 47305 CCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCT 47364 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| | ||| || || || ||||| || || |||||||| || | Sbjct 47365 TTCACATTTTCAATAGAGTCAGACGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGA 47424 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || ||||||||| Sbjct 47425 GTTTTGACGAAGATCTGCATT 47445 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || | ||||| || || || ||||| || || ||||| || || Sbjct 46915 TTACCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCTTGGATTTTC 46974 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||| || || |||| ||| || || ||||| | || || |||||||||||| Sbjct 46975 GCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCTGTC 47034 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || || || || |||||||| Sbjct 47035 AAGGTTTTGACGAAGATCTGCAT 47057 >seq1485 Length=353179 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || |||||||| || ||||||||| || || || ||| || ||| ||| |||||| Sbjct 325280 ACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCT 325221 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || || || ||||| || | ||||||||||| || || ||||| || |||||| Sbjct 325220 AGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGA 325161 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || || |||||||| || | || |||| || || || | || || ||||| Sbjct 325160 ATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTA 325101 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || ||||| || ||||| Sbjct 325100 CCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq1282 Length=287270 Score = 125 bits (138), Expect = 1e-23 Identities = 213/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 198319 AGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAA 198378 |||| |||| || ||| ||| ||||| || | |||| |||| | | | ||||| | Sbjct 32980 AGGCTAAAACCCACGACAATCTGTGGAACGCCGCTCAAAAACAGCTTGTGCGTGAAGGGA 32921 Query 198379 AAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACAC 198438 | ||||| | ||| | || |||||||||||||| || || || || |||||| | | Sbjct 32920 AGATGCACGGGTTTATGAGGATGTACTGGGCTAAGAAAATCCTAGAGTGGACAGCCAGTC 32861 Query 198439 CGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGG 198498 ||||||| || ||| | | || | ||| || | | | |||||||| | | Sbjct 32860 CGGAAGAAGCATTGGCGGAGGCGCTGTACTTCAACGATCATTTCTCGCTAGACGGTAACG 32801 Query 198499 ATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGA 198558 | | ||||| | ||| ||||| |||||||| || || || | || |||| || ||||| Sbjct 32800 ACGCGAACGGTTTCGTGGGTTGCATGTGGTCGATATGTGGGGTTCACGATCAAGGGTGGA 32741 Query 198559 AAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAAT 198618 || || | | |||||||||||| | || ||||| || | |||| ||||| ||| | Sbjct 32740 GGGAGAGGAGTGTGTTTGGGAAGATACGGTACATGAACTACAACGGTTGTAAGAGAAAGT 32681 Query 198619 TTGATGTTG 198627 ||||| ||| Sbjct 32680 TTGATATTG 32672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981763043728900