Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1985 89.7 7e-13 seq3689 87.8 2e-12 seq2340 87.8 2e-12 seq806 87.8 2e-12 seq321 87.8 2e-12 >seq1985 Length=140083 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 18223 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 18164 Query 8718 CCCGACGAGGAGCA 8731 || | || |||||| Sbjct 18163 CCTGTCGGGGAGCA 18150 >seq3689 Length=268539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 31214 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 31273 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 31274 CCTGTCGGGGAGC 31286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 31771 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 31830 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 31831 CCTGTCGGGGAGC 31843 >seq2340 Length=352566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 267907 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 267848 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 267847 CCTGTCGGGGAGC 267835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 268034 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 268093 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 268094 CCTGTCGGGGAGC 268106 >seq806 Length=119131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 90059 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 90000 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 89999 CCTGTCGGGGAGC 89987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 90341 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 90282 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 90281 CCTGTCGGGGAGC 90269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 90775 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 90716 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 90715 CCTGTCGGGGAGC 90703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 90893 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 90952 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 90953 CCTGTCGGGGAGC 90965 >seq321 Length=199883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 196229 TCCTCGATAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCAGGGTTCGATTC 196288 Query 8718 CCCGACGAGGAGC 8730 || | || ||||| Sbjct 196289 CCTGTCGGGGAGC 196301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652803181144000