Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq968 84.2 2e-11 seq1485 82.4 7e-11 >seq968 Length=289341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || | ||| ||||||||||| || |||||||| || ||||||| ||| | | | Sbjct 49224 ATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGACTTAACGTTC 49283 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| | ||| | || || || || | ||| | ||| || || |||||||| || ||| Sbjct 49284 TCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGAGTCTTAACG 49343 Query 133650 AAAATCTGCAT 133660 ||||||||||| Sbjct 49344 AAAATCTGCAT 49354 >seq1485 Length=353179 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 |||||||| || ||||| || | | || ||| | || || ||||||||||| ||| | Sbjct 325262 TCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCA-TCTTCTAGCTGCTTGCCGGCGAA 325204 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 || || ||||| || || || ||||| ||||| ||||| ||||| ||| | | Sbjct 325203 GATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATCTTAGCCTTAACATT 325144 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 || | | |||| | ||||| || || | ||||| || || || || || ||||| || Sbjct 325143 TTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGAC 325084 Query 133649 GAAAATCTGCAT 133660 ||||| ||||| Sbjct 325083 AAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483389981924000