Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq968 109 1e-18 seq802 109 1e-18 seq1485 86.0 1e-11 seq1337 84.2 5e-11 >seq968 Length=289341 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || |||||||| |||||| ||||||| || ||||||| Sbjct 47669 CAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTCTGAC 47610 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||| || ||||| || || || ||||| || ||| ||| Sbjct 47609 TCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGACCAACAA 47550 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || ||| ||||||| || | ||| || || ||||| || Sbjct 47549 AGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTACAATATC 47490 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || || ||||| ||||| || || || || || || Sbjct 47489 CAAAAGGAGTCAACTCTCCATCTCGTCTTAAGGCT 47455 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| |||||||||||| || || ||| | || |||||| Sbjct 46584 GTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAACAACGTCTGATCTTC 46525 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| ||||| | ||| || ||||||||| | ||||| ||||| Sbjct 46524 GCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAACATTCAGAAGGAGTCA 46465 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 ||||||||| | || ||||||| Sbjct 46464 ACTCTTCACTTGGTCCTGAGACT 46442 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 ||||||||||| |||||| |||||||||| ||||||| | | ||| || ||||| Sbjct 47876 ACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCTGACTCGATAGAAAATGTCAAAGCT 47817 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| || |||||||| || ||| || ||||| ||||||||||| || Sbjct 47816 AA-GATCCAAGATAAGGAAGGAATCCCACCCGACCAACAGAGACTGATCTTCGCCGGCAA 47758 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| | || || || || || | ||||||||| | || ||||| || || || || Sbjct 47757 GCAACTTGAGGACGGCAGAACCCTTAGTGATTACAACATTCAAAAAGAATCCACCCTCCA 47698 Query 206373 CCTTGTTTTGAGACTTCGA 206391 | | || | |||| ||| Sbjct 47697 CTTGGTGCTCCGACTCCGA 47679 >seq802 Length=67242 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 206248 AAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCC 206307 || ||| | || || || |||||||| ||| || ||| ||| | |||||||||||| Sbjct 46702 AAACAATACATACAGGATAAAGAAGGCATTCCTCCTGACCAACAACGGCTTATCTTCGCC 46643 Query 206308 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 206367 || || |||||||||||| ||||| ||| | || |||||| | ||||| ||| |||| Sbjct 46642 GGCAAACAGTTGGAAGATTACAGGACGTTGTCAGACTACAACATACAGAAGGAGAGTACT 46583 Query 206368 CTTCACCTTGTTTTGAGACT 206387 | ||||||||||||||||| Sbjct 46582 TTACACCTTGTTTTGAGACT 46563 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||||||||||||||| | |||| ||| ||||| | || ||||| | ||| ||||| Sbjct 46563 AGTCTCAAAACAAGGTGTAAAGTACTCTCCTTCTGTATGTTGTAGTCTGACAACGTCCTG 46622 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||| || ||||||||||||||||||||||| Sbjct 46623 TAATCTTCCAACTGTTTGCCGGCGAAGATAAGCCGTTGTTG 46663 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 206248 AAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCC 206307 |||||||| || || || |||||||| ||| || | ||| ||||| | || || Sbjct 46948 AAGCAAAATATCCAGGAGAAAGAAGGTATTCCCTCGTATCAACAACGACTTTTATTTGCT 46889 Query 206308 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 206367 ||||| |||||||||||| |||| || || || |||||| || ||||| || |||| Sbjct 46888 GGAAAACAGTTGGAAGATTACAGGATGTTAGCAGACTACAACATCGAGAAACAGAGTACT 46829 Query 206368 CTTCACCTTGTTTTGA 206383 | || |||||||||| Sbjct 46828 TTACATCTTGTTTTGA 46813 >seq1485 Length=353179 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| || || || ||||| | || || || | ||| || | Sbjct 325080 TTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAGCGACTCAAT 325139 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 |||| || ||| ||||||||||| |||||||| || || || || | || Sbjct 325140 CGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCAACAGCGTCT 325199 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||||||||| |||||| | |||||||| | || | || |||||| ||||||| Sbjct 325200 TATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAACATCCAGAA 325259 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAG 206384 ||| || || ||| | || ||||| Sbjct 325260 AGAAAGCACGCTGCACTTGGTGTTGAG 325286 >seq1337 Length=66774 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | ||||| ||||| || ||||||||||||||||| | ||| | ||| |||||| Sbjct 40978 CAACGTCTTATTTTCGCTGGGAAGCAGTTGGAAGATGGTCGAACTCTTAGCGACTACAAC 41037 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||||||| ||| ||||| |||||| | ||||||| Sbjct 41038 ATTCAGAAAGAGAGTACCCTTCATCTTGTTCTTCGACTTCG 41078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181743575397100