Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1485 96.9 3e-15 seq968 93.3 4e-14 seq387 82.4 7e-11 >seq1485 Length=353179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 ||||| || ||||||||||| || | ||| || |||||| ||||| || |||| || Sbjct 325262 TCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCCGGCGAAG 325203 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || ||||||||||||||||| || || |||||||| || ||| || || | | | Sbjct 325202 ATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATCTTAGCCTTAACATTT 325143 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | | ||| | ||||| || || | || | || ||||| || || ||||| | Sbjct 325142 TCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGACA 325083 Query 132113 AAAATCTGCAT 132123 ||||| ||||| Sbjct 325082 AAAATTTGCAT 325072 >seq968 Length=289341 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | ||||||| || ||||||||||| || |||| || || ||| || Sbjct 46451 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGGCCATCCTCC 46510 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | |||| ||||| |||||||| ||||| || |||||||| || Sbjct 46511 AACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGG 46570 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | | ||||| ||||| ||||||| || | || || Sbjct 46571 ATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTG 46630 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||| |||||||| Sbjct 46631 CCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| || |||||||| |||| || || ||||| ||||||||||||| Sbjct 47477 TTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGACCGTCTTCCAGCTGTTTACCGG 47536 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | | ||||| || || || || || || || || |||||| || | Sbjct 47537 CGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCCTTGTCCTGAATTTTGGCCTTGA 47596 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | | || | ||||| ||||| | || | ||||| ||||||||||| | Sbjct 47597 CGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCT 47656 Query 132108 TTATGAAAATCTGCATGACT 132127 | | || ||||||||| || Sbjct 47657 TGACAAAGATCTGCATGCCT 47676 >seq387 Length=79051 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| | ||| |||| ||| | | | |||||| || |||||||||||||||| ||| Sbjct 24710 CGCAGTCTCAACACCAGATGAAGGGTACTCTCTTTCTGGATGTTGTAGTCGCTCAGGGTC 24651 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 | | ||||| | ||||||||| | | | || |||||||||||||| || || || ||| Sbjct 24650 CTCCCGTCTTCCAACTGTTTACCCGCAAAAATCAGACGCTGTTGATCAGGTGGAATTCCT 24591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476580816036000