Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq968 131 2e-25 seq1485 109 6e-19 >seq968 Length=289341 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| |||||| | ||| | ||| || |||||||| |||||||||||||| || | | Sbjct 47674 CCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTA 47733 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| ||| || || || ||||| || || |||| | ||| || ||||| || Sbjct 47734 AGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGG 47793 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || |||||| || | | ||| || | ||||| Sbjct 47794 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACT 47853 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| || || ||||| || ||||| |||||||| Sbjct 47854 TCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || ||||||||| |||| || || | ||| || || || ||||| ||||||||||| || Sbjct 46429 CTGTCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATC 46488 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | | ||| | || || | ||| ||||| || || |||| ||| || |||||||| Sbjct 46489 ACTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGG 46548 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || |||||||| ||||| ||||| || || || | | ||||| | || Sbjct 46549 AGGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTC 46608 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| || || || || || || ||||| || ||||| Sbjct 46609 AACTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 >seq1485 Length=353179 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560 |||||| | ||| |||||| ||| || || ||||||||||| | || ||| || || Sbjct 325284 CAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATC 325225 Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620 || ||||| ||||| || || || | |||||| ||||| || || || |||||||| || Sbjct 325224 TTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTC 325165 Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGT 134680 |||||| || || || || | || |||| | || || || || || || || Sbjct 325164 TTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGT 325105 Query 134681 TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || | ||||| || ||||||||||| Sbjct 325104 CTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505366180852000