Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq968 136 3e-27 seq1282 129 5e-25 seq1485 102 7e-17 seq802 84.2 2e-11 >seq968 Length=289341 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || |||||||| || || |||| ||||| ||||| || || || Sbjct 47673 CATGCAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTC 47614 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| |||| ||||| |||||||| ||||| || || || |||||||| || Sbjct 47613 TGACTCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGACCA 47554 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | |||||| ||||| |||||||| || || | || ||||| Sbjct 47553 ACAAAGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTACAA 47494 Query 27167 CATTCAAAAGGAGTCGAC 27184 || ||||||||||| || Sbjct 47493 TATCCAAAAGGAGTCAAC 47476 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | ||||| || ||||| || || ||| Sbjct 46659 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCC 46600 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| |||| || || ||||| |||||||||||||| || || ||||||||| Sbjct 46599 GATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAA 46540 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| ||||| || ||||| || | || | ||||||||| Sbjct 46539 CAACGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAAC 46480 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| || | || ||||| Sbjct 46479 ATTCAGAAGGAGTCAACTCTTCACTTGGT 46451 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||| |||| || || | || ||||| |||||||| || || Sbjct 47901 CATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTC 47842 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | |||||| || || ||||| || ||||| || |||||||| || Sbjct 47841 TGACTCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCA 47782 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | ||||||||| ||| | || ||| | ||| || |||||||| Sbjct 47781 ACAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAA 47722 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || || ||| | || ||||| | || | || || ||||| Sbjct 47721 CATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACTCCGAGGAGGCAT 47671 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| |||||| | ||||| || ||||| || || ||| Sbjct 47057 ATGCAGATCTTCGTCAAAACCTTGACAGGCAAGACCATTACCCTCGAAGTTGAGCCATCC 46998 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| |||| || || ||||| ||||||||||| || || || || || ||| Sbjct 46997 GATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAGGGAATCCCCCCTGACCAA 46938 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||| | || | ||||| || Sbjct 46937 CAGCGTCTGATCTTTGCCGGTAA 46915 >seq1282 Length=287270 Score = 129 bits (142), Expect = 5e-25 Identities = 199/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 |||||||||| || ||| |||||| ||| ||||| || |||||||| |||||| | | Sbjct 32959 TGTGGAACGCCGCTCAAAAACAGCTTGTGCGTGAAGGGAAGATGCACGGGTTTATGAGGA 32900 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||| ||||| || || || | || ||| | || || | ||| || | | | Sbjct 32899 TGTACTGGGCTAAGAAAATCCTAGAGTGGACAGCCAGTCCGGAAGAAGCATTGGCGGAGG 32840 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | | | || || ||| | | | |||| || ||| | || || | ||| |||| Sbjct 32839 CGCTGTACTTCAACGATCATTTCTCGCTAGACGGTAACGACGCGAACGGTTTCGTGGGTT 32780 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 | |||||||| || || || || ||||||||||| |||| |||| | | |||||||| | Sbjct 32779 GCATGTGGTCGATATGTGGGGTTCACGATCAAGGGTGGAGGGAGAGGAGTGTGTTTGGGA 32720 Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAAT 135757 |||| || || |||||||| ||||||||| ||||| ||| || Sbjct 32719 AGATACGGTACATGAACTACAACGGTTGTAAGAGAAAGTTTGAT 32676 >seq1485 Length=353179 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || || || || || || | Sbjct 325072 ATGCAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAGC 325131 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || || || ||||||||||||||||| || || || |||||| Sbjct 325132 GACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCAA 325191 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | ||||| || ||| || || |||||| Sbjct 325192 CAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAAC 325251 Query 27168 ATTCAAAAGGA 27178 || || || || Sbjct 325252 ATCCAGAAAGA 325262 >seq802 Length=67242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 |||||| | || || || ||||||||||| || || || ||||| || | || | |||| Sbjct 46702 AAACAATACATACAGGATAAAGAAGGCATTCCTCCTGACCAACAACGGCTTATCTTCGCC 46643 Query 27126 GGCAAACAATTGGAAG---ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 |||||||| ||||||| |||| ||| | || || |||||||| || |||||| Sbjct 46642 GGCAAACAGTTGGAAGATTACAG---GACGTTGTCAGACTACAACATACAGAAGGAGAGT 46586 Query 27183 ACCTTACATTTGGTTTTG 27200 || ||||| | |||||| Sbjct 46585 ACTTTACACCTTGTTTTG 46568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434890673952000