Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq968 150 4e-31 seq1485 131 4e-25 seq802 109 1e-18 seq1337 95.1 3e-14 seq387 84.2 5e-11 >seq968 Length=289341 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || |||| ||| || || ||||| ||||| |||||||| || || || || || | Sbjct 47455 AGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGA 47514 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||||||||| || || |||||||| | | ||||||||| || || | ||| ||| Sbjct 47515 CCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCC 47574 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| || || || ||||| ||||| | |||||| ||||| || |||||| Sbjct 47575 TTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTG 47634 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || |||||||| ||||| | |||||| Sbjct 47635 ATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||| || | |||||||| ||||||| ||||||||| || ||||||||| Sbjct 49215 CCTGCAAAGATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGAC 49274 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || || | ||| || ||| ||||| | || || ||||||||||| ||| Sbjct 49275 TTAACGTTCTCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGA 49334 Query 211095 GTCTTTACAAACACCTGCATTT 211116 ||||| || || | |||||||| Sbjct 49335 GTCTTAACGAAAATCTGCATTT 49356 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || || ||||||||||| || | ||| || |||||||||||||| | Sbjct 47305 CCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCT 47364 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||| || | |||||| |||||||| | ||||| ||||| || |||||| Sbjct 47365 TTCACATTTTCAATAGAGTCAGACGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGA 47424 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | ||||||| Sbjct 47425 GTTTTGACGAAGATCTGCATT 47445 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| ||||| || | ||||||||||| || | ||| ||||||||||| || || Sbjct 48089 TTACCTGCAAAGATTAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGAATTTTG 48148 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| ||||| | |||||| || || ||||||||||| || ||||| || Sbjct 48149 GCCTTGACGTTCTCGATCGAGTCAGAAGGCTCCACTTCGAGAGTGATAGTTTTTCCTGTC 48208 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | ||||| Sbjct 48209 AAAGTCTTGACGAAGATTTGCAT 48231 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || || || ||||||||||| || | |||||| || || |||||||| Sbjct 48827 CTTACCAGCAAAAATCAGACGCTGTTGGTCAGGGGGGATTCCTTCTTTATCTTGGATCTT 48886 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| ||||| | || || ||||| ||||| || || ||||| || || Sbjct 48887 AGCTTTGACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGT 48946 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | |||||| Sbjct 48947 CAAGGTCTTCACGAAGATCTGCAT 48970 >seq1485 Length=353179 Score = 131 bits (144), Expect = 4e-25 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || ||| ||||| |||||||| || || |||||| | |||||||| ||||| Sbjct 325275 GTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTG 325216 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||||||||| || ||||| || || || | ||||| ||||| || ||||| Sbjct 325215 CTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATCTT 325156 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCC 211087 || || |||||||| | ||| ||| || ||||| || ||||| ||||| || Sbjct 325155 AGCCTTAACATTTTCGATTGAGTC---GCTAGGCTCGACCTCTAGGGTGATTGTCTTACC 325099 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || ||||| | ||||| Sbjct 325098 CGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq802 Length=67242 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | |||||||| | ||| ||| || || ||||| || || | | ||||| Sbjct 46563 AGTCTCAAAACAAGGTGTAAAGTACTCTCCTTCTGTATGTTGTAGTCTGACAACGTCCTG 46622 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| ||| ||||| ||||||||||| ||||||||||||||||||| ||||| Sbjct 46623 TAATCTTCCAACTGTTTGCCGGCGAAGATAAGCCGTTGTTGGTCAGGAGGAATGCCTTCT 46682 Query 211017 TTGTCCTGGATCTTTTGTTT 211036 || ||||| || | |||||| Sbjct 46683 TTATCCTGTATGTATTGTTT 46702 >seq1337 Length=66774 Score = 95.1 bits (104), Expect = 3e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || ||||| ||||| || |||||| || ||||| || || ||| || Sbjct 41078 CGAAGTCGAAGAACAAGATGAAGGGTACTCTCTTTCTGAATGTTGTAGTCGCTAAGAGTT 41019 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | |||||||||| |||||| || ||||| ||||| ||||||||||| ||||||| Sbjct 41018 CGACCATCTTCCAACTGCTTCCCAGCGAAAATAAGACGTTGTTGGTCGGGAGGAA 40964 >seq387 Length=79051 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| |||||||| || || |||||||| | ||| || |||||||||| Sbjct 24462 CCCTCCTTGTCTTGGATCTTAGCCTTTACATTTTCGATAGAGTCTGAAGGTTCAACCTCG 24403 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | |||||| Sbjct 24402 AGTGTGATGGTCTTACCCGTTAGGGTCTTCACGAAAATCTGCAT 24359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159076256661500