Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq968 141 2e-28 seq1485 127 5e-24 seq1337 100 7e-16 seq802 86.0 1e-11 >seq968 Length=289341 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| || || | |||||| |||||||||||||| | |||||||| | ||| Sbjct 47680 CGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTAAGGGTT 47739 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || || || || ||||| || |||||||| |||| ||||||||||| || || ||| Sbjct 47740 CTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGGATTCCT 47799 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| || ||| ||| || | ||| || | ||||| || | Sbjct 47800 TCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACTTCCAGA 47859 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || |||||||| || | ||| | |||||| Sbjct 47860 GTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||||||| | ||| ||||| || || || || | |||||||| || ||| | Sbjct 46442 AGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGG 46501 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | |||||| ||||||||||| || |||||||| ||||| ||||| ||||| Sbjct 46502 CCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCT 46561 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||||||||| || ||| || ||||| | || || | || || || | || Sbjct 46562 TTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTA 46621 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| ||||| || || | ||| | ||||| Sbjct 46622 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || | ||| || |||||||| || || ||||||| |||||| || || ||||| Sbjct 47455 AGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGA 47514 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| ||||| || || |||||||| | || |||||||||||| || || || ||| Sbjct 47515 CCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCC 47574 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || || || ||| || ||||| | ||| || | || || || | ||| Sbjct 47575 TTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTG 47634 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || |||| ||| || Sbjct 47635 ATAGTTTTTCCAGTCAGAGTCTT 47657 Score = 104 bits (114), Expect = 6e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| |||| ||||||||||| ||||| |||||||| |||||||||||| | Sbjct 49215 CCTGCAAAGATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGAC 49274 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || || || | ||| || | ||| || ||||| || || ||||| ||||||| | Sbjct 49275 TTAACGTTCTCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGA 49334 Query 225694 GTTTTTATGAACACTTGCATTT 225715 || || | ||| | ||||||| Sbjct 49335 GTCTTAACGAAAATCTGCATTT 49356 >seq1485 Length=353179 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| || | ||| || ||| |||||| |||| ||||| || | |||| ||| Sbjct 325286 CTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCA 325227 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 |||||||||||||| || ||||||||||| || ||||| || || || |||||||| ||| Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| ||||| ||| ||| |||||| | ||| | || || |||| ||||| Sbjct 325166 TCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATT 325107 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| | ||||| | || | |||||| Sbjct 325106 GTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq1337 Length=66774 Score = 100 bits (110), Expect = 7e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || ||||| || || || ||||| || | ||||| ||| | |||| Sbjct 41078 CGAAGTCGAAGAACAAGATGAAGGGTACTCTCTTTCTGAATGTTGTAGTCGCTAAGAGTT 41019 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | ||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 41018 CGACCATCTTCCAACTGCTTCCCAGCGAAAATAAGACGTTGTTGGTCGGGAGGAATACCT 40959 >seq802 Length=67242 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| |||||||| | ||| || || || | ||||| || | ||| || || Sbjct 46563 AGTCTCAAAACAAGGTGTAAAGTACTCTCCTTCTGTATGTTGTAGTCTGACAACGTCCTG 46622 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||| | ||| || || ||||||||||| ||||||||||| || ||||| ||||| Sbjct 46623 TAATCTTCCAACTGTTTGCCGGCGAAGATAAGCCGTTGTTGGTCAGGAGGAATGCCTTCT 46682 Query 225616 TTGTCTTGGATCTTTTGCTT 225635 || || || || | ||| || Sbjct 46683 TTATCCTGTATGTATTGTTT 46702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192453275539400