Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq968 138 3e-27 >seq968 Length=289341 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || || | ||| ||||| ||||| ||||| |||||||| ||||| || | |||| Sbjct 47452 CTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTCAGAGTT 47511 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || ||| ||||||||||| | || || ||||| | | |||||| Sbjct 47512 CGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCC 47571 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || |||||||| ||||| |||| | ||| ||| ||| ||||| ||| Sbjct 47572 TCCTTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGA 47631 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || |||||||| || |||| |||||| Sbjct 47632 GTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGTTC 151944 ||||| ||| || | || || || || |||||||| ||||||||||| |||| |||| Sbjct 47682 GAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATC-ACTAAGGGTTC 47740 Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 | || || || || || ||||||||||| || ||||| ||||| | | |||||||| Sbjct 47741 TGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGGATTCCTT 47800 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| ||||| || || ||||||| | |||| ||| ||| ||| ||||| |||| Sbjct 47801 CCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACTTCCAGAG 47860 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || | |||||| ||||||| ||||| Sbjct 47861 TGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 96.9 bits (106), Expect = 8e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| ||||| | |||||||| ||||| || || ||||||||||| | ||| Sbjct 46439 CTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTCAGAGTG 46498 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| || | || || |||||||| || | || || || | | |||||| Sbjct 46499 CGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCT 46558 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||| || || |||| | || || ||| ||||| || Sbjct 46559 TCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGG 46618 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || | ||||||||||||| |||||| Sbjct 46619 GTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153745405022100