Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq968 152 1e-31 seq1485 143 6e-29 seq387 113 9e-20 seq1337 84.2 5e-11 >seq968 Length=289341 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| ||||||||| |||||||| ||| | Sbjct 47674 CCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTA 47733 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||| ||||| ||||| || ||||| ||||||| | |||||||| || Sbjct 47734 AGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGG 47793 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| ||||| || | || || | ||| |||| || ||| Sbjct 47794 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACT 47853 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || ||||||||||| ||||| || ||||| Sbjct 47854 TCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| ||| || |||||||||||||| | || || || || ||| Sbjct 46469 TCCTTCTGAATGTTGTAATCACTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAG 46528 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||||||||| || ||||| || || ||||||||||| || || |||||| | Sbjct 46529 ATCAGACGTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTC 46588 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| | || || | || |||||||| || || ||||| || ||||| ||||| ||| Sbjct 46589 TCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACG 46648 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 46649 AAGATCTGCAT 46659 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||| ||||||||| || || || || || || || ||||| ||||| ||| Sbjct 47482 TCCTTTTGGATATTGTAGTCACTCAGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAG 47541 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | ||||||||| || || ||||||||||| || || || || || ||| | Sbjct 47542 ATCAATCTTTGTTGGTCGGGTGGGATTCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTC 47601 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| | ||| |||| || ||||| |||||||| || || || |||| |||||| || Sbjct 47602 TCGATCGAGTCAGAAGGCTCAACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACA 47661 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 47662 AAGATCTGCAT 47672 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||||| ||| ||||||||| || || ||||| ||||||||||| || Sbjct 46915 TTACCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCTTGGATTTTC 46974 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || |||||| | ||||| | || || | || |||||||| || || ||||| || ||| Sbjct 46975 GCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCTGTC 47034 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| |||||||| Sbjct 47035 AAGGTTTTGACGAAGATCTGCAT 47057 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||||| | |||||||| ||||| || ||||| ||||||||||||| Sbjct 49215 CCTGCAAAGATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGAC 49274 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || | |||||| | |||||| || | || || ||||| ||||||| | Sbjct 49275 TTAACGTTCTCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGA 49334 Query 283080 GTCTTAACGAATATCTGCATTT 283101 ||||||||||| |||||||||| Sbjct 49335 GTCTTAACGAAAATCTGCATTT 49356 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| | | ||||||||| || || ||||||||||| || || || Sbjct 48089 TTACCTGCAAAGATTAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGAATTTTG 48148 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || ||| | ||||| | ||| |||| || |||||||||||||| || || || ||| Sbjct 48149 GCCTTGACGTTCTCGATCGAGTCAGAAGGCTCCACTTCGAGAGTGATAGTTTTTCCTGTC 48208 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || ||||| Sbjct 48209 AAAGTCTTGACGAAGATTTGCAT 48231 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||| ||||||||| || || || || || ||||||||||| Sbjct 48828 TTACCAGCAAAAATCAGACGCTGTTGGTCAGGGGGGATTCCTTCTTTATCTTGGATCTTA 48887 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| ||| | ||||| | || || | || |||||||| || || ||||| || ||| Sbjct 48888 GCTTTGACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTC 48947 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| |||||||| Sbjct 48948 AAGGTCTTCACGAAGATCTGCAT 48970 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| ||||||||| || || ||||| ||||| |||||||| ||| Sbjct 47305 CCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCT 47364 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || |||| ||| || | || || || | ||||| ||||| || || | | Sbjct 47365 TTCACATTTTCAATAGAGTCAGACGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGA 47424 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || ||||| ||||||||| Sbjct 47425 GTTTTGACGAAGATCTGCATT 47445 >seq1485 Length=353179 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || | |||||||||||| ||||||||||||||| ||| || || ||||| ||| Sbjct 325280 ACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCT 325221 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || ||||| ||||| | ||| ||||| || || ||||| || |||||||| Sbjct 325220 AGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGA 325161 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || || | ||||| | ||| || ||||| || || ||||| |||||| Sbjct 325160 ATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTA 325101 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | || || || || || ||||| Sbjct 325100 CCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq387 Length=79051 Score = 113 bits (124), Expect = 9e-20 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||||||||||||||||||||| || ||||| | ||||||| ||| |||| ||| || || Sbjct 24463 ACCCTCCTTGTCTTGGATCTTAGCCTTTACATTTTCGATAGAGTCTGAAGGTTCAACCTC 24404 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||||||||| | ||||| ||||| |||||||| Sbjct 24403 GAGTGTGATGGTCTTACCCGTTAGGGTCTTCACGAAAATCTGCAT 24359 >seq1337 Length=66774 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 282861 ATAAAACGTGAA-CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGAT 282919 ||||||| | || || || || || ||||| || ||||| | || || ||||| || || Sbjct 41097 ATAAAACATCAAACCTCCGCGAAGTCGAAGAACAAGATGAAGGGTACTCTCTTTCTGAAT 41038 Query 282920 GTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTG 282979 ||||||||| ||| || || ||||| || | || ||||| || || || | |||||| Sbjct 41037 GTTGTAGTCGCTAAGAGTTCGACCATCTTCCAACTGCTTCCCAGCGAAAATAAGACGTTG 40978 Query 282980 TTGGTCACCCGGAATACC 282997 |||||| |||||||| Sbjct 40977 TTGGTCGGGAGGAATACC 40960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046670802135400