Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1485 113 3e-20 seq968 113 3e-20 seq387 91.5 1e-13 >seq1485 Length=353179 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 44123 CTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCG 44182 |||||||||| ||| |||||||| || || ||||||||||| || || || | Sbjct 325286 CTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCA 325227 Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| ||||| ||||| | |||||| ||||||| || | |||||| || Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || ||||| ||| | || | || | |||| | || ||||| | || || Sbjct 325166 TCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATT 325107 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||| || || || |||||||| Sbjct 325106 GTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq968 Length=289341 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||||||||||| |||| |||||| || |||||| || ||||||||||| Sbjct 46432 TCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACT 46491 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || |||| |||||| || || ||||||| ||| || ||||| | ||| Sbjct 46492 CAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGG 46551 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | ||||| || || || ||| || | | |||| | || | |||| | || | Sbjct 46552 AATTCCTTCTTTGTCTTGGATTTTC-GCCTTTACGTTCTCGATCGAATCGGATGGCTCAA 46610 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || | ||||| ||||| || || | ||||||||||||||| ||||| Sbjct 46611 CTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT- 44165 |||||| |||||||| || || || || || || || |||||||||||| ||||| | Sbjct 47442 CATTCCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTC 47501 Query 44166 -CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || |||| |||||||| || ||||| |||||||| | || || || Sbjct 47502 ACTCAGAGTT--CGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCG 47559 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | || ||||| ||| | | || || | | |||| | || | ||| | | Sbjct 47560 GGTGGGATTCCCTCCTTGTCC-TGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGG 47618 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||| || || || ||||| || || ||||| || ||||| |||||| Sbjct 47619 CTCAACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCATG 47673 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| | ||||| ||| || ||| || ||||| ||||||||||| Sbjct 47670 CATGCCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATC 47729 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || || || |||| || || ||||| ||||| ||||||| | ||| || || Sbjct 47730 ACTAAG--GGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCG 47787 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || ||||| || | || |||| | ||| | | Sbjct 47788 GGTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGC 47847 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| |||| || || || ||||| || | ||||| ||||||||||||||| Sbjct 47848 TCCACTTCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCATG 47901 >seq387 Length=79051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||||||||||||||| ||||| || ||||| || ||||||||||| ||| Sbjct 24716 CCTCCTCGCAGTCTCAACACCAGATGAAGGGTACTCTCTTTCTGGATGTTGTAGTCGCTC 24657 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | |||| |||| ||| || || ||||| |||| |||||| ||||| Sbjct 24656 AGGGTCCTCCCGTCTTCCAACTGTTTACCCGCAAAAATCAGACGCTGTTGATC 24604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359968024346700