Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19]
5,100 sequences; 155,865,547 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq968 147 5e-30
seq1485 138 3e-27
seq802 102 2e-16
>seq968
Length=289341
Score = 147 bits (162), Expect = 5e-30
Identities = 164/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || |||||||| ||||| || || || || || |||
Sbjct 47669 CAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTCTGAC 47610
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| |||||||||||||| || ||||||||||| || |||||||| || ||||| |||
Sbjct 47609 TCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGACCAACAA 47550
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| |||||||| ||||| || | ||||| || || || ||
Sbjct 47549 AGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTACAATATC 47490
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||| || ||||| || ||||| || || || || |||
Sbjct 47489 CAAAAGGAGTCAACTCTCCATCTCGTCTTAAGGCTGAGA 47451
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||| | ||||||||||| ||||| || || ||||| || |||
Sbjct 47897 CAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCTGAC 47838
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || |||||| ||||| || || || ||||||||||| || ||||| ||
Sbjct 47837 TCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCAACAG 47778
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||||||||| || || || || || || || || ||| ||||| ||| |
Sbjct 47777 AGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAACATT 47718
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||||||||| || || || ||||
Sbjct 47717 CAAAAAGAATCCACCCTCCA-CTTG 47694
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || || || || || |||||||| || || || ||
Sbjct 46656 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCCGAT 46597
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||||||||| || || || || |||||||||||||| ||||| || || |||
Sbjct 46596 TCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAACAA 46537
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || ||| | || ||||| | ||||| ||||| ||| |
Sbjct 46536 CGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAACATT 46477
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || ||||| || || | || ||||||| |||
Sbjct 46476 CAGAAGGAGTCAACTCTTCACTTGGTCCTGAGACTGAGA 46438
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||| | ||||||||||| ||||| ||||| ||||| || |||
Sbjct 48228 CAAATCTTCGTCAAGACTTTGACAGGAAAAACTATCACTCTCGAAGTGGAGCCTTCTGAC 48169
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| |||||||||||||| || ||||||||||| || |||||||| || ||||| ||
Sbjct 48168 TCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCTGACCAACAG 48109
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|||| ||||| || || ||
Sbjct 48108 AGACTAATCTTTGCAGGTAA 48089
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||||||||| || || || |||||| | ||||| || || |||
Sbjct 47441 CAGATCTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCGTCTGAC 47382
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || ||| ||||| ||||||||||| |||||||| || ||||| ||
Sbjct 47381 TCTATTGAAAATGTGAAAGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAACAG 47322
Query 178044 CGACTTATCTTCGCCGG 178060
|| || ||||| |||||
Sbjct 47321 CGTCTGATCTTTGCCGG 47305
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| | ||||| || || || |||||||| || || || ||
Sbjct 47054 CAGATCTTCGTCAAAACCTTGACAGGCAAGACCATTACCCTCGAAGTTGAGCCATCCGAT 46995
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||||||||| || || || || |||||||| |||||||| || ||||| ||
Sbjct 46994 TCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAGGGAATCCCCCCTGACCAACAG 46935
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| || ||||| ||||| ||
Sbjct 46934 CGTCTGATCTTTGCCGGTAA 46915
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || || || || || |||||||| || || || ||
Sbjct 48967 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCCGAT 48908
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| ||||||||||||||| ||||| || || |||||||||||||| || ||||| ||
Sbjct 48907 TCGATCGAGAACGTCAAAGCTAAGATCCAAGATAAAGAAGGAATCCCCCCTGACCAACAG 48848
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| || || || || || ||
Sbjct 48847 CGTCTGATTTTTGCTGGTAA 48828
>seq1485
Length=353179
Score = 138 bits (152), Expect = 3e-27
Identities = 160/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|||||||| || ||||| ||||| || || || |||||||| ||||| || || ||
Sbjct 325075 CAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGA--GCCTAGCG 325132
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | ||||| || || || |||||||| ||||||||||| ||||| || || || |
Sbjct 325133 ACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCAAC 325192
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || |||||||||||||| || ||||| |||||||| | || ||| || || |||
Sbjct 325193 AGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAACA 325252
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135
|||| |||||| || ||||| | || |||||
Sbjct 325253 TCCAGAAAGAAAGCACGCTGCACTTGGTGTTGAG 325286
>seq802
Length=67242
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058
|||||| | || ||||| |||||||| || ||||| ||||| ||||| ||||||||||||
Sbjct 46702 AAACAATACATACAGGATAAAGAAGGCATTCCTCCTGACCAACAACGGCTTATCTTCGCC 46643
Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118
|| |||||| | |||||| ||||| | | || || ||| | || || || ||
Sbjct 46642 GGCAAACAGTTGGAAGATTACAGGACGTTGTCAGACTACAACATACAGAAGGAGAGTACT 46583
Query 178119 CTGCATCTTGTTTTGAGACTCAGA 178142
| || |||||||||||||| |||
Sbjct 46582 TTACACCTTGTTTTGAGACTAAGA 46559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203652543689400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |