Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq968 147 5e-30 seq1485 138 3e-27 seq802 102 2e-16 >seq968 Length=289341 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || |||||||| ||||| || || || || || ||| Sbjct 47669 CAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTCTGAC 47610 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||||||||||| || ||||||||||| || |||||||| || ||||| ||| Sbjct 47609 TCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGACCAACAA 47550 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||||| ||||| || | ||||| || || || || Sbjct 47549 AGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTACAATATC 47490 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || ||||| || ||||| || || || || ||| Sbjct 47489 CAAAAGGAGTCAACTCTCCATCTCGTCTTAAGGCTGAGA 47451 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | ||||||||||| ||||| || || ||||| || ||| Sbjct 47897 CAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCTGAC 47838 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || |||||| ||||| || || || ||||||||||| || ||||| || Sbjct 47837 TCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCAACAG 47778 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||||||||| || || || || || || || || ||| ||||| ||| | Sbjct 47777 AGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAACATT 47718 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 47717 CAAAAAGAATCCACCCTCCA-CTTG 47694 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| || || || || Sbjct 46656 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCCGAT 46597 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||||||||| || || || || |||||||||||||| ||||| || || ||| Sbjct 46596 TCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAACAA 46537 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || ||||| | ||||| ||||| ||| | Sbjct 46536 CGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAACATT 46477 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || ||||| || || | || ||||||| ||| Sbjct 46476 CAGAAGGAGTCAACTCTTCACTTGGTCCTGAGACTGAGA 46438 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | ||||||||||| ||||| ||||| ||||| || ||| Sbjct 48228 CAAATCTTCGTCAAGACTTTGACAGGAAAAACTATCACTCTCGAAGTGGAGCCTTCTGAC 48169 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||||||||||| || ||||||||||| || |||||||| || ||||| || Sbjct 48168 TCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCTGACCAACAG 48109 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||| || || || Sbjct 48108 AGACTAATCTTTGCAGGTAA 48089 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| || || || |||||| | ||||| || || ||| Sbjct 47441 CAGATCTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCGTCTGAC 47382 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || ||| ||||| ||||||||||| |||||||| || ||||| || Sbjct 47381 TCTATTGAAAATGTGAAAGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAACAG 47322 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 47321 CGTCTGATCTTTGCCGG 47305 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | ||||| || || || |||||||| || || || || Sbjct 47054 CAGATCTTCGTCAAAACCTTGACAGGCAAGACCATTACCCTCGAAGTTGAGCCATCCGAT 46995 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||||||||| || || || || |||||||| |||||||| || ||||| || Sbjct 46994 TCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAGGGAATCCCCCCTGACCAACAG 46935 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || ||||| ||||| || Sbjct 46934 CGTCTGATCTTTGCCGGTAA 46915 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || || |||||||| || || || || Sbjct 48967 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCCGAT 48908 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||||||||||||| ||||| || || |||||||||||||| || ||||| || Sbjct 48907 TCGATCGAGAACGTCAAAGCTAAGATCCAAGATAAAGAAGGAATCCCCCCTGACCAACAG 48848 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || || || || || || || Sbjct 48847 CGTCTGATTTTTGCTGGTAA 48828 >seq1485 Length=353179 Score = 138 bits (152), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| || ||||| ||||| || || || |||||||| ||||| || || || Sbjct 325075 CAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGA--GCCTAGCG 325132 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | ||||| || || || |||||||| ||||||||||| ||||| || || || | Sbjct 325133 ACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCAAC 325192 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || |||||||||||||| || ||||| |||||||| | || ||| || || ||| Sbjct 325193 AGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAACA 325252 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 |||| |||||| || ||||| | || ||||| Sbjct 325253 TCCAGAAAGAAAGCACGCTGCACTTGGTGTTGAG 325286 >seq802 Length=67242 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 |||||| | || ||||| |||||||| || ||||| ||||| ||||| |||||||||||| Sbjct 46702 AAACAATACATACAGGATAAAGAAGGCATTCCTCCTGACCAACAACGGCTTATCTTCGCC 46643 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || |||||| | |||||| ||||| | | || || ||| | || || || || Sbjct 46642 GGCAAACAGTTGGAAGATTACAGGACGTTGTCAGACTACAACATACAGAAGGAGAGTACT 46583 Query 178119 CTGCATCTTGTTTTGAGACTCAGA 178142 | || |||||||||||||| ||| Sbjct 46582 TTACACCTTGTTTTGAGACTAAGA 46559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203652543689400