Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq11254 212 6e-50 seq45074 91.5 2e-13 >seq11254 Length=169933 Score = 212 bits (234), Expect = 6e-50 Identities = 478/708 (68%), Gaps = 13/708 (2%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 ||||| |||||||| |||||||| || || || || ||||||||||||| ||| ||||| Sbjct 70934 TTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTT 70875 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | || | | |||| || || || | | | ||| || |||||||||| Sbjct 70874 GACGAATTGTACAGTTTTTCA--TAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATT 70817 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || || || ||||| | | ||||||||| || || || || | ||||||| Sbjct 70816 CAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCG 70757 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA-ACTCGTTCCTCG 16930 ||||||| ||| ||||| | ||| || ||| | || || | || | | || Sbjct 70756 TCAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGAT-CTCGTGTACCCTATTCTGC 70698 Query 16931 GACGGTGTATGTTTAAGATGTT---TAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 || ||| |||| || || || | | || | || || || || | | ||||| || Sbjct 70697 GAGGGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCT 70638 Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 || || || ||||| || ||||| || || || || ||||| |||||||||||| Sbjct 70637 TCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTT 70578 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 |||||||| || || || || ||||||||||| || || || || ||||| || Sbjct 70577 AACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCT 70518 Query 17108 ATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA-TTTCTGCACCCACTCGGC 17166 | | ||| |||| | | | || | | ||||| ||| || |||| | ||| Sbjct 70517 AGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGTATCCAATTTATGG-CCCATTTGGC 70459 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG 17226 || | || | |||| || |||||||| || || | || | ||||| | | || Sbjct 70458 CTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTTAGCAACTGGTCTTTA-CGTACAG 70400 Query 17227 G-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 | || | ||| | ||||| || | | |||||||||||| ||||||||||| ||||||| Sbjct 70399 GATCTTTAATAAAAGTATCTATCATCAAGCTGTACATTTCAGAGTGTATGTTTTCCATGG 70340 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 | ||||||||||||||||| || |||||| | | || ||||| | || | | Sbjct 70339 CAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAACTGGACTTCATTACAAAACCTCT 70280 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 ||||| |||||||| |||||||||||||| || || || || |||| Sbjct 70279 GTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCAAAGAAAGCCA 70232 >seq45074 Length=316632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| || || ||||||||||| ||| || || | || ||||| ||||||| || | Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||||||||| || || || ||||| || ||||| || || || | |||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 | | | || || || || | || | ||| | | ||||||||| | |||| || | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 |||| | |||| || ||| ||||| ||||| || || || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517063163399640