Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq11254 212 6e-50 seq45074 102 8e-17 >seq11254 Length=169933 Score = 212 bits (234), Expect = 6e-50 Identities = 574/869 (66%), Gaps = 22/869 (3%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| |||| || | || || | ||||| || ||||| ||||| || || | Sbjct 70964 ACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGG 70905 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCA 16019 || || || ||||| |||| ||| ||||| | | || | | | || || || Sbjct 70904 GAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCA--TAATTCA 70847 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 || || | | ||| || ||||||||||| || || || ||||| | | | || | Sbjct 70846 AATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCA 70787 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 |||| || ||| || || | |||| || ||||| | ||||||||||| ||| || | Sbjct 70786 TTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCAT 70727 Query 16140 CTTTAATGATATCGGTGGCTCGTGTT-TCAGACGGTGTATGGTTTAGGTGTT---TAAAC 16195 | | ||| ||| || | | || | || ||| |||| || ||||| | | || Sbjct 70726 CCGACACGATCTCG-TGTACCCTATTCTGCGAGGGTTTATGCTTCAGGTGGTCGTTGAAA 70668 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 | ||| || || || | | |||| ||||| || || ||||| || |||||| || Sbjct 70667 AGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAAC 70608 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 ||||| || ||||| ||||||||||||||||| || || |||||||| || ||| Sbjct 70607 GTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAA 70548 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 ||||| || || || || ||||| || | | ||| | || | ||| ||| | Sbjct 70547 AAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAA 70488 Query 16376 TTACGAATCC-ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 | | |||| |||| || |||||| ||| || | | | ||| || |||||||| Sbjct 70487 TCGTGTATCCAATTTATG-GCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTAT 70429 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 || || | ||| | ||||| | ||| | ||| | ||||| |||| || || Sbjct 70428 TGCGTTTAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCT 70369 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||||||| ||||||||||| || ||||| ||||||||||| || || || || || Sbjct 70368 GTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTC 70309 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || ||||| |||| | | || ||||| || || ||||| ||||| || Sbjct 70308 TGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCT 70249 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAA------ATATTTTTCGTCAGATGTAAG 16668 ||||||||| || |||| ||| | |||||| | |||||||| || | Sbjct 70248 TGCAGCAAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTCTTTTTCGTTCAATTT--- 70192 Query 16669 AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGC 16728 | |||||||||| | |||| || | || || |||||| |||||| | ||| Sbjct 70191 GTTCTGCCAATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAATACGAAGC 70132 Query 16729 CACTGCCTTTTTATACATTTTCCAAATAT 16757 || |||| || ||||| || |||||| Sbjct 70131 CAGGGCCTGCTTGTACATCTT--AAATAT 70105 >seq45074 Length=316632 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || || || ||||||||||| || || || | || ||||| ||||||| || || Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||| ||||| || ||||| || || || ||||| || ||||| | |||||| || Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | || || || || | |||| ||| | | ||||||||| | |||| || ||| Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 || | ||||| ||| ||| ||||| ||||| || ||||| Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510937678674360