Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11254 199 5e-46 seq45074 134 2e-26 seq66969 132 6e-26 seq36930 93.3 5e-14 >seq11254 Length=169933 Score = 199 bits (220), Expect = 5e-46 Identities = 524/790 (66%), Gaps = 21/790 (3%) Strand=Plus/Minus Query 23784 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTGAGACATAACTCCCAT 23842 ||| ||||||| || |||||| | ||| || | || | ||| | ||| || ||||| Sbjct 71012 TTTTTTTAAAATTCTTCATCTATCGTAAA-TGTTCGTGTATCT---GTCATCACCCCCAT 70957 Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||||| |||| ||| || | ||||| ||||| || ||||| ||||| | || || || Sbjct 70956 CTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTT 70897 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 |||||||||| | ||||| | ||| || | | ||| | | ||| || | | Sbjct 70896 CTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTCAAATCTGTCAG 70837 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 || ||| || || ||||| || || || |||||| |||||||| || || Sbjct 70836 CAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAG 70777 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 ||| || || | || | || | ||| |||||||| || | || || || | | Sbjct 70776 TTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACAC--- 70720 Query 24083 AGATCT----TACTGT-TTCTTCACTCGGTGGATACAATAAATGTT---TAAACATCAAA 24134 ||||| ||| | |||| | ||| || | | || | | || | | Sbjct 70719 -GATCTCGTGTACCCTATTCTGCGAG-GGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGG 70662 Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || | |||||| ||| || || ||||| |||| |||||| ||||| | Sbjct 70661 CAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAA 70602 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || || || || | |||||| || | ||||| ||||||||||| Sbjct 70601 CCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAG 70542 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG-CTG--TCATGT 24311 || |||||||| | ||||| || | |||| | || || | | | || ||| Sbjct 70541 ATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGT 70482 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| ||| ||||| | ||||||||| | || ||||| || || ||||| || || Sbjct 70481 ATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTT 70422 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 | | | || ||| | |||||||| | | ||||| |||| | || |||||| Sbjct 70421 AGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATT 70362 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || || |||||||| ||||| || ||||||||||| ||| || | || || | || | Sbjct 70361 TCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAAC 70302 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || ||||| ||||||| | | ||||| ||||| || || || ||||| || || ||| Sbjct 70301 TGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCA 70242 Query 24552 AAAAACGCCA 24561 || || |||| Sbjct 70241 AAGAAAGCCA 70232 >seq45074 Length=316632 Score = 134 bits (148), Expect = 2e-26 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || ||||| || | ||| || || || || || ||||| | || ||||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 24277 CAATAAGTCTTTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 | | || ||| ||| ||||| | || | |||| |||||| || |||||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 | |||| ||||||||| |||||||| || || ||||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| || || ||||| | ||||| |||||||| || || || ||||| ||||| Sbjct 224457 TCTTTAATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCT 224516 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 ||||| || || ||||||||||| || || ||| ||| ||||| Sbjct 224517 ATTTGGAAGCCATAGAAACATCTTGCTTCAGTAGCCTGCACTTC 224560 >seq66969 Length=194959 Score = 132 bits (146), Expect = 6e-26 Identities = 167/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 53938 TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 53997 ||||||||| ||||||||| || |||||| || | || ||||||||||||| || Sbjct 45358 TGTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGG 45417 Query 53998 ACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCC 54056 |||||||| | ||||||||| | | ||| || || |||||||| | || ||||||| Sbjct 45418 ACACATCAGAGTCCACTCTCCAT-TGCTTTCTACACGCTTCATAAACAAGTCTGGAATCC 45476 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 | | || ||| |||||||| || | ||| | || || |||||||| ||||| ||| | Sbjct 45477 ACATGGC-ATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACAA 45535 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 || ||||| | | ||||||| |||||| || |||| ||| || Sbjct 45536 TCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACAT 45579 Score = 125 bits (138), Expect = 8e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| | ||||||||||| ||||||||||| ||| | || || |||||||| |||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| ||||| ||||| || || ||||| |||||||||||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | |||| ||| ||||| | |||||| || | | ||| | || ||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || ||||| |||||||||||||| | || || |||||||| ||||| | ||| | Sbjct 30633 TACCTGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTAT 30692 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||| |||||||| || || ||||||||||| || || || ||||| || || | || | Sbjct 30693 AGATTCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAG 30752 Query 53269 ACTATTTCTAAGACC 53283 || ||||||| ||| Sbjct 30753 GCTGTTTCTAACACC 30767 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 |||||| |||| || || ||||| ||| ||||| || ||||||||||| ||||||||| Sbjct 38583 GATCCTTCATAGGTCTCATATGGCCCTAATTTCTCTGCAAGTTCACAACTGGCCTCTAAT 38642 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||| | | |||||| || || || | || ||||| | || |||| | || ||| Sbjct 38643 GCAGCAAAGTAAATGCAGTCAAATATTTCTTTGTTTAGTTTCTGGGCTTGCTCACTCTCA 38702 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || ||| | | | | ||| || || || || | ||| || || || || || |||||| Sbjct 38703 AAAGGAAACCTCATTAAAATGAAAGCATCAGCAAGTCCCTGCACTCCTATTCCAATAGGT 38762 Query 53561 CTATGTCTCTTATTAGA 53577 |||||||| |||||| Sbjct 38763 CTATGTCTAAAATTAGA 38779 >seq36930 Length=140287 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 148196 TTCCCGATTTTGTAGTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAG 148255 |||| || ||||| || | ||||| || ||||| | | |||||||| ||||||| Sbjct 114766 TTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAATAATGGGAGCAG 114825 Query 148256 AGTTTACATCTTCCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTA 148315 |||||| ||||| ||||||||||| |||| ||||| || |||||||| | || Sbjct 114826 AGTTTAGTCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGATTTCCACGTATTG 114885 Query 148316 CTAGGATTAGAGAAGATAAAACGTGGAAA 148344 ||| ||||||| |||||||| ||| || Sbjct 114886 CTAAAGTTAGAGACGATAAAACATGGGAA 114914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593168154989040