Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11254 156 4e-33 seq35982 98.7 1e-15 seq45074 96.9 4e-15 seq9175 86.0 6e-12 >seq11254 Length=169933 Score = 156 bits (172), Expect = 4e-33 Identities = 405/610 (66%), Gaps = 17/610 (3%) Strand=Plus/Plus Query 116602 CCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGA 116661 ||| ||||| | | |||||| |||||| || || | |||||||| ||||| Sbjct 70071 CCGTTTCGTTTTATACCCCATTAGATACCCAGATATATTTAAGATGTACAAGCAGGCCCT 70130 Query 116662 GGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC--GACTGGGAG 116719 ||| |||| ||||| || || ||||| ||| |||| || | | | | || ||| || Sbjct 70131 GGCTTCGTATTGGACTGTAGAAGAGGTTGACTTGTC--AGTAGATGTTCAAGATTGGCAG 70188 Query 116720 CGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776 | |||||||| || || ||| | ||||| | | | ||||| || || || || Sbjct 70189 AACAAATTGAACGAAAAAGAACGCAAGTTCATTTCGTCCATTCTGGCTTTCTTTGCTGCA 70248 Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836 |||||||||||||| ||||| || || | || | || | | || || ||| | | Sbjct 70249 AGCGACGGCATCGTTAACGAAAACCTAGCACAGAGGTTTTGTAATGAAGTCCAGTTTCCA 70308 Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 || || | || ||||| |||||||| |||||||| ||| | ||||| |||||||| Sbjct 70309 GAAGCCAAATCTTTTTACGGATTTCAGATTGCCATGGAAAACATACACTCTGAAATGTAC 70368 Query 116897 ---TCGACCCTCATCGACACGTACGTGC--GCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951 | || | || || || | | | || | | | | ||| | ||| | | | Sbjct 70369 AGCTTGA---TGATAGATACTTTTATTAAAGATCCT-GTACGTAAAGACCAGTT-GCTAA 70423 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 |||| || || || || || ||||| | |||||||| | ||||| | ||||| Sbjct 70424 ACGCAATAGAAACCATACCTTGCGTTCAGAAGAAGGCCAAATGGGCCATAAATTGGATAC 70483 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 || || | || | || ||| ||| | || || || | || || ||| ||| Sbjct 70484 ACGATTCTGATTCTAATTTTGCCGTGCGACTGCTAGCATTTGCCGTGGTAGAAGGCATCT 70543 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 ||||||| || ||||| || || || |||||| | |||||||| || |||||||| || Sbjct 70544 TCTTTTCTGGTAGTTTTGCTGCAATTTTTTGGTTAAAGAAACGAGGTCTCATGCCGGGTT 70603 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || |||||||||||||| ||| ||||| || ||| | || | | |||||||| Sbjct 70604 TAACGTTCAGCAACGAGCTAATCAGTAGGGATGAAGGTTTACACTATCAATTTGCCTGCC 70663 Query 117192 TGCTGTTCAA 117201 | || ||||| Sbjct 70664 TACTTTTCAA 70673 >seq35982 Length=112201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || ||||| || || || ||||| |||||| | || || ||| | | Sbjct 104192 ATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCA 104251 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | || |||||||| || || | || ||| Sbjct 104252 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAG 104311 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || |||||||| | || || | || || | ||||||||| Sbjct 104312 CAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104371 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || || ||| | || || | ||||| || || Sbjct 104372 ATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGG 104418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || ||||| || || | || || ||| | | Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | || | ||||||| || ||||| || || || | || || Sbjct 104936 GACACTATCGAAAACG-TAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 104994 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || ||||| | || || | || || | || || || Sbjct 104995 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAA 105054 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| ||||||| ||| | || ||| | ||||| || || Sbjct 105055 CATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGG 105102 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || ||||| || || | || || ||| | | Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | || | || || | || ||||| || || || | || || Sbjct 104708 GACACTATCGAAAACG-TAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104766 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || ||||| | || || | || || | |||||||| Sbjct 104767 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAA 104826 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| || ||| | || ||| | ||||| || || Sbjct 104827 CATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGG 104874 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||||| || ||||| || || || | || |||||||| || |||| || || ||| Sbjct 105762 AAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCTTTGCTGGTAAA 105821 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || | || || | || || | ||||||||||||||||| ||| | || || ||| Sbjct 105822 CAATTAGAAGATGGTCGTACATTGTCAGACTACAACATCCAGAAAGAGTCAACCCTTCAT 105881 Query 40894 CTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||||| || || Sbjct 105882 TTAGTGTTGCGTTTGAGAGGAGG 105904 >seq45074 Length=316632 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||||| || ||||| || || ||||| || || |||||||| || || ||||| ||| Sbjct 223202 TTGTTCAATGCCATTGAAACAATGCCATGTGTAAAAGAGAAAGCAGATTGGGCTCTGAAA 223143 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||| | | | | || || | | ||| | | ||||| || || || || || Sbjct 223142 TGGATAAATGAAAAAAATGCAGCTTATGCAGAGAGAGTTGTGGCATTTGCAGCAGTTGAA 223083 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | || || || || ||||| || || |||||||||||||| || || || | ||| Sbjct 223082 GGGATATTTTTCTCTGGTAGTTTTGCAGCTATATTTTGGCTCAAAAAGCGAGGAATTATG 223023 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || || ||||| || || || ||| ||||| |||| Sbjct 223022 CCTGGTCTTACCTTCAGTAATGAACTTATCAGTAGGGATGAGG 222980 >seq9175 Length=65522 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || || |||||||| | || || ||| | | Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCA 22821 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||| | ||||| | ||||||||||| || || | ||||| Sbjct 22820 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22761 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || ||||| || || || | | || || |||||||||| Sbjct 22760 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTACAAC 22701 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || |||| || ||| |||| ||||| Sbjct 22700 ATTCAGAAAGAATCCACACTCCATTTAGTATTGCG 22666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514738931982480