Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq35982 145 1e-29 seq9175 127 3e-24 seq27022 95.1 2e-14 >seq35982 Length=112201 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||||| || || ||||| ||||| | || | ||| || | Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || ||||| ||||||||||||||||||||||| || || ||||| Sbjct 104936 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 104995 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || ||||||||||| ||| |||| ||||| |||||||| Sbjct 104996 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAAC 105055 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||| || || | |||||||| || | || |||| ||||| ||| || Sbjct 105056 ATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGGTATGCAAATTT 105113 Score = 143 bits (158), Expect = 4e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || | ||||| ||||| || ||| | || | ||| || Sbjct 104419 AATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATC 104478 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || || ||||| || || ||||||||||||||||| || || ||||| Sbjct 104479 TGACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104538 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| ||||| || ||||||||||| ||| |||| ||||| ||| || || Sbjct 104539 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAA 104598 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||| ||||| | |||||||| || | || |||| ||||| ||| || Sbjct 104599 CATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGGTATGCAAATTT 104657 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||||| || || ||||| ||||| | || | ||| || Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || ||||| || || ||||||||||||||||| || || ||||| Sbjct 105164 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 105223 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || ||||||||||| ||| |||| ||||| |||||| || Sbjct 105224 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAAC 105283 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||| || || | |||||||| || | || |||| ||||| ||| || Sbjct 105284 ATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGGTATGCAAATTT 105341 Score = 129 bits (142), Expect = 9e-25 Identities = 175/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| |||||| | || ||||| ||||| |||||||| || | || | ||| Sbjct 104187 TACAGATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAAC 104246 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | || || || ||| |||| ||||| || |||||||| || || || || | Sbjct 104247 CTTCAGACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAG 104306 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||| ||| | ||||| ||||| || ||||||||||| ||| |||| ||||| ||| | Sbjct 104307 ATCAGCAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACT 104366 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAA 124773 | || || || ||||| ||||| | |||||||| ||| | || |||| || || ||| Sbjct 104367 ACAACATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGGAATGCAAA 104426 Query 124774 ATT 124776 || Sbjct 104427 TTT 104429 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||||| || || ||||| ||||| | || | ||| || Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || ||||| || || ||||||||||||||||| || || ||||| Sbjct 104708 GACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104767 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || ||||||||||| ||| |||| ||||| || || || Sbjct 104768 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAAC 104827 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||| || || | |||||||| || | || |||| ||||| ||| || Sbjct 104828 ATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGGTATGCAAATTT 104885 Score = 123 bits (136), Expect = 4e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTG 124674 ||||| ||||||||||||||||||||||| || || ||||| ||| | ||||| |||| Sbjct 105754 TAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCTTTG 105813 Query 124675 CAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAA 124734 | || ||||||||||| ||| |||| ||||| ||| || || || || ||||| |||| Sbjct 105814 CTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAACATCCAGAAAGAGTCAA 105873 Query 124735 CTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | | ||||| || || ||||| |||| || Sbjct 105874 CCCTTCATTTAGTGTTGCGTTTGAGAGGAGG 105904 Score = 116 bits (128), Expect = 6e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||||| ||||| ||||| ||||| | || | ||| || | Sbjct 105332 ATGCAAATTTTCGTCAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCT 105391 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || ||||| ||||||||||||||||||||||| || || ||||| Sbjct 105392 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 105451 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATT 124705 ||| | ||||| ||||| || ||||||||||| ||| |||| || || Sbjct 105452 CAACGTCTTATCTTTGCTGGGAAACAATTAGAAGATGGTCGTACGTT 105498 >seq9175 Length=65522 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || ||||| || || || |||| ||||| || Sbjct 23108 ATGCAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAACCATCA 23049 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| ||||| || || ||||| || || ||||| || ||| Sbjct 23048 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22989 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| ||||||||| | || ||| || ||||| || || || ||| Sbjct 22988 CAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAT 22929 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||||| | ||| | || | ||| | ||||| ||||| Sbjct 22928 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGGTAT 22879 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || ||||| || || ||| |||| ||||| || Sbjct 23336 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTAGAAGTTGAACCATCA 23277 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| ||||| || || ||||| || || ||||| || ||| Sbjct 23276 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 23217 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| ||||||||| | || ||| || ||||| || || || || Sbjct 23216 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAC 23157 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||||| | ||| | || | ||| | ||||| ||||| Sbjct 23156 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGGTAT 23107 >seq27022 Length=14792 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 205651 TCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTA 205710 ||||| || |||||||||| | ||| | | || ||| ||||||| ||||| ||| Sbjct 3624 TCAGGGTTGGTTTTTATTTTGTGTATGACTTCTGCTAACTGATCAATTCCTTTCCCTGTG 3683 Query 205711 TAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACT 205770 || | |||| |||||| | |||| ||||||||||| | ||| || || ||||| ||| Sbjct 3684 TAGTCAGTATGCATATCTTTGTATTCTGCACCAAAATGTCTCCACTGGAACCCATATACT 3743 Query 205771 GGACCTAAATCACCT 205785 |||||||| |||||| Sbjct 3744 GGACCTAAGTCACCT 3758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754751792246400