Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq35982 123 2e-23 seq11254 113 4e-20 seq9175 84.2 2e-11 >seq35982 Length=112201 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||||||| ||||| || | ||| |||||||| ||||||||||| || Sbjct 104648 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTG 104589 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | ||||| ||||| |||| ||||| |||||||| |||| Sbjct 104588 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104529 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| || || ||| || | ||||| ||||| | || | || Sbjct 104528 GAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGT-TCC 104470 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || |||| |||||| |||||||| ||||| Sbjct 104469 ACTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||||||| ||||| || | ||| |||||||| || ||||||||||| Sbjct 105332 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTG 105273 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | ||||| ||||| |||| ||||| |||||||| |||| Sbjct 105272 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 105213 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| || || ||| || | ||||| ||||| | || | || Sbjct 105212 GAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGT-TCC 105154 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| ||||| || ||||| || ||||| ||||| Sbjct 105153 ACTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 >seq11254 Length=169933 Score = 113 bits (124), Expect = 4e-20 Identities = 299/454 (66%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 132881 GACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTTTT 132940 ||||||| ||| ||| | || || ||||||||||||| |||||||| ||||| || Sbjct 73392 GACGGTATACTGAATGGGTTTCGCAGCAGGTTTTGTGCGCAGGTAATACATTCCCGTCTT 73333 Query 132941 CAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCGGC 133000 | | ||| ||| ||| ||| || ||||||| || | ||| | ||| ||||| Sbjct 73332 AATCTCCCTCTTCCAGCCGTGAAAATGCATGCTCGTCAACTTTTCGTACGAGGGATCGGC 73273 Query 133001 GACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTT 133060 | | || |||||||| |||||||| | | || || | |||| ||||||| Sbjct 73272 AATGTGAATGTTGAGCGATTGCGACTGATCTACGTAGGGGGCTCTGTCGCATGCCATGTC 73213 Query 133061 TATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGG 133120 || | |||| ||| ||||| | |||||| |||| | ||| | ||||| || Sbjct 73212 AATGACGTTCTTTTGAGAGATTTCCCACACGGTCTTGTAGAGGTCCTTAATGTGCTGGGG 73153 Query 133121 TATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGG 133180 ||| | ||||||| |||||||| || | ||| | |||| ||| | | || Sbjct 73152 TATACTGGCAATGTTTTGCACGGAACCTCCGTTGGCAATGATCTCGTTTTTGAGGT-CGT 73094 Query 133181 AGTGTAAATGT-CGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACT 133239 || | || | |||||| || || | |||| ||||||||||| ||||||| Sbjct 73093 CGTTCCACAGTCCCAGATCGCACAGGTCTCGAATCAGATGATGGTTGACCACCTGAAACT 73034 Query 133240 CGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGT 133299 | || | || || | |||| || | || || | ||||||| |||||||||| Sbjct 73033 CTCCAGACAGGACCCTTCTGGTGTAAATGTTACTAGTATAAGGTTCGATCGATTCGTTGT 72974 Query 133300 TGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 | || | | || ||||| ||||| |||||||| Sbjct 72973 TACCCAAGAGTTGTGCCGTTGTCGCTGTGGGCAT 72940 >seq9175 Length=65522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||| | ||| || || |||| ||| || ||||| ||||||||||| ||| | Sbjct 22654 CCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGAC 22713 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||| || || ||||||||||| |||| | | ||| || || || || Sbjct 22714 AGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGA 22773 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| ||||| ||||| ||| || | ||| | || || | || | || || Sbjct 22774 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGT-TCAAC 22832 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || |||| |||||| ||||| || ||||| Sbjct 22833 TTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433436109580516