Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1561 98.7 2e-15 seq58126 86.0 1e-11 >seq1561 Length=162734 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 135741 TTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCC-TG 135799 || || ||| | | |||||||||| |||||| ||| | |||| | ||| | || || || Sbjct 22285 TTCACAGACTTGTGTTGTAAGAGCGTGGGATTTAAAGAGACCATT-ATTATTTGCCCCTG 22227 Query 135800 CAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAAT 135859 | |||||||| ||||||||||||||| | |||| | ||| ||||| || || ||| Sbjct 22226 CTATGAATACCTATATGTGGGAACATCCACTGACAGGCAGACAGATAGAGACATTGAAAA 22167 Query 135860 ATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAA 135919 | |||| | || |||||| ||| ||| || ||| |||||||||| || | || | Sbjct 22166 GTTTGGGGTACAAAGAAATTCCATGTATAAGGAAGAAATTAGCATGTGGTGATGATGGTA 22107 Query 135920 ATG 135922 ||| Sbjct 22106 ATG 22104 >seq58126 Length=73693 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||| ||| | | || || || || ||||| || ||||||| ||||||||| Sbjct 35111 GCATTTTTTGGTGCTATGATCAACTCCTTCATTCATGTAATAATGTACAGTTATTATGGC 35052 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | | || ||| || || | |||||| |||||||||||||||||||| ||||| || Sbjct 35051 TTATCAGCCCTTGGACCACATATGCAGAAA-TATCTATGGTGGAAACGTTACCTTACCAT 34993 Query 52176 AATGCA 52181 || || Sbjct 34992 GATACA 34987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922336230562920