Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq43241 109 6e-19 seq37902 107 2e-18 seq17018 105 8e-18 seq37972 102 9e-17 >seq43241 Length=222632 Score = 109 bits (120), Expect = 6e-19 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 134709 AAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 134650 Query 60119 ACCACTATACTACCGAGGATTGAATATA 60146 ||||||||||||||||||| | || ||| Sbjct 134649 ACCACTATACTACCGAGGACTTAAAATA 134622 >seq37902 Length=17816 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 7823 AAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 7764 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 7763 ACCACTATACTACCGAGGA 7745 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 || |||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 756 AATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 697 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 696 CTGACCACTATACTACCGAGGA 675 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 || |||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 8808 AATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 8749 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 8748 CTGACCACTATACTACCGAGGA 8727 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||| | | ||||||||||||||||||| |||||| ||||| | Sbjct 10661 CTCCCCGGCGGGGAATCGAACTCCGTTCTCCCGCGTGACAGGCGGGCATACTGACCACAA 10602 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10601 TACTAGCGAGGA 10590 >seq17018 Length=107603 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| || | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 13020 AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 12961 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 12960 TGACCACTATACTACCGAGGA 12940 >seq37972 Length=77724 Score = 102 bits (112), Expect = 9e-17 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 60054 ATGAAAA--ATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||||||| ||| || ||| |||| ||||||||||||| ||||||||||||||||| ||| Sbjct 69303 ATGAAAATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGACGG 69362 Query 60111 ACATACTCACCACTATACTACCGAGGA 60137 ||||| ||||||||||||||||||| Sbjct 69363 GGATACTGACCACTATACTACCGAGGA 69389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571284573076440