Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq35982 120 5e-22 seq9175 102 1e-16 seq39591 89.7 8e-13 >seq35982 Length=112201 Score = 120 bits (132), Expect = 5e-22 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | |||||| |||||||| | || || ||||| || || || |||| Sbjct 104420 TTCCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTG 104361 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| ||||||||||| |||||||| || | | ||||||||| |||| Sbjct 104360 ACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAG 104301 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| |||||||| || ||| |||||| ||||| Sbjct 104300 GAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTA 104241 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || ||||| ||||| ||||| | |||||| | ||||| ||||| Sbjct 104240 CTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 116 bits (128), Expect = 5e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || |||||||| | || || ||||| || || |||||||| Sbjct 105330 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGAC 105271 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| |||||||| || | | ||||||||| |||||| Sbjct 105270 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105211 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| ||||| ||| ||| Sbjct 105210 ATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACT 105151 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| |||||||| || || | |||||| | ||| |||||||| Sbjct 105150 TCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || |||||||| | || || ||||| || |||||||| || Sbjct 105102 CCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGAC 105043 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| |||||||| || | | ||||||||| |||||| Sbjct 105042 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104983 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| || || ||| ||| Sbjct 104982 ATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACT 104923 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| |||||||| || || | |||||| | ||| |||||||| Sbjct 104922 TCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 107 bits (118), Expect = 3e-18 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || |||||||| | || || ||||| || || || || || Sbjct 104874 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGAC 104815 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| |||||||| || | | ||||||||| |||||| Sbjct 104814 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104755 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| ||||| ||| ||| Sbjct 104754 ATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACT 104695 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| |||||||| || || | |||||| | ||| |||||||| Sbjct 104694 TCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || |||||||| | || || ||||| || || || ||||| Sbjct 104646 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGAC 104587 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| |||||||| || | | ||||||||| |||||| Sbjct 104586 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104527 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||| || || ||| ||| Sbjct 104526 ATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACT 104467 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || |||||||| ||||| || ||||| | || ||||||||| Sbjct 104466 TCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | | || || ||||| | || || ||||| || || || ||||| Sbjct 105905 TCCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGA 105846 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| ||||||||||| |||||||| || | | ||||||||| ||||| Sbjct 105845 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 105786 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||||||||||| Sbjct 105785 AATACCTTCTTTATCTTG 105768 >seq9175 Length=65522 Score = 102 bits (112), Expect = 1e-16 Identities = 155/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | ||||| ||||| | || |||||||| || || || || | Sbjct 22652 TTCCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGG 22711 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | ||| || | ||||||||||||||| |||||||| || || || || | Sbjct 22712 ACAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTG 22771 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| ||||| || || |||||||| ||| | Sbjct 22772 GAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAA 22831 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||| ||||| || ||||| || || ||||| | || |||||||| Sbjct 22832 CTTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 >seq39591 Length=213653 Score = 89.7 bits (98), Expect = 8e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | ||| | || | ||| | ||||||||||| || |||||||| || Sbjct 29205 TCCTCCTCTCAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGGATGTTATAATCGGA 29146 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || || | ||| || || ||||| |||||||| ||||||||||||||||| || || Sbjct 29145 CAATGTCCTTCCATCCTCCAACTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGGGG 29086 Query 146170 AATTCCT 146176 ||| ||| Sbjct 29085 AATACCT 29079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742833312572160