Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11254 284 1e-71 seq45074 138 1e-27 >seq11254 Length=169933 Score = 284 bits (314), Expect = 1e-71 Identities = 599/887 (68%), Gaps = 30/887 (3%) Strand=Plus/Minus Query 15924 TATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTT 15983 ||| || ||| || ||| |||||||||| || || ||||||||||| || || |||| Sbjct 70975 TATCTGTCATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTT 70916 Query 15984 TTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TT 16040 | ||||| | || || || ||||| |||| ||| |||||| || ||| ||| || Sbjct 70915 TGCCTTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTT---GACGAATTGTACAGTT 70859 Query 16041 TATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTA 16100 | || | ||| || || | ||| || || |||||||| || ||||| ||| | Sbjct 70858 TTTCATAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCA 70799 Query 16101 AATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTA 16160 ||||||||| || | ||| || || | ||||| || ||||| | || ||||| Sbjct 70798 TGGTGTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTA 70739 Query 16161 TATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAAT---- 16216 | ||| || || || ||||| | ||| ||||| || |||||||| Sbjct 70738 TCAAAACGGCATCC--GACACGATCTCGTG-TACCCTATTCTGCG-AGGGTTTATGCTTC 70683 Query 16217 AAGTGTT---TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATT 16273 | ||| | | || | || || ||||| | | | || || ||||| |||||||| ||| Sbjct 70682 AGGTGGTCGTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATT 70623 Query 16274 AACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCG 16333 | |||||| || || | ||| ||||| || |||||||| || | |||||| || || Sbjct 70622 AGCTCGTTGCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCA 70563 Query 16334 GCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCG 16393 ||||| |||||||||||| || ||||| || |||||||||| | || |||| | | Sbjct 70562 GCAAAACTACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCA 70503 Query 16394 TACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAG 16453 | | || | | |||||| ||| | ||||| || || || | | ||| || Sbjct 70502 AAATTAGAATCAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAA 70443 Query 16454 TTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTA 16513 ||| | |||||||| || | || | | ||| | |||| |||| ||||| Sbjct 70442 GGTATGGTTTCTATTGCGTTTAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTA 70383 Query 16514 TCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAA 16573 ||||| | || || |||||||| || || || || ||||| || |||||||| || ||| Sbjct 70382 TCTATCATCAAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAA 70323 Query 16574 AAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTA 16633 || || | ||||| | | || |||||| ||||||| | ||||| |||||||||| Sbjct 70322 AAAGATTTGGCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTA 70263 Query 16634 ACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt------tttt 16687 || || || ||||| || ||||| || || || ||| ||| || || |||| Sbjct 70262 ACGATGCCGTCGCTTGCAGCAAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTCTTTT 70203 Query 16688 tCGTT--ATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTA 16745 ||||| || || || ||| || || |||| ||| || || |||||||||| Sbjct 70202 TCGTTCAATTTG-----TTCTGCCAATCTTGAACATCTACTGACAAGTCAACCTCTTCTA 70148 Query 16746 CAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCT 16792 |||||||| | ||||| | |||| || ||||| || |||| ||| Sbjct 70147 CAGTCCAATACGAAGCCAGGGCCTGCTTGTACATCTTAAATATATCT 70101 >seq45074 Length=316632 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || |||||||| || | || || || |||||||| ||||| | |||||| ||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| |||||| || ||||| ||||||||||| |||||||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 16379 ACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgct 16438 || | || ||| | || | | |||||| | ||||||||| |||||||| |||| Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 16439 ttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 || | ||| ||||| ||| | || || ||||| || || Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Score = 105 bits (116), Expect = 6e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 ||||| || || |||||||| ||||| ||||| || || | | || ||| |||| | Sbjct 225515 TTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATGT 225574 Query 16685 ttttCGTTATC--TGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 | || | ||| | ||||||| ||||| ||||||||||| ||||| || |||| Sbjct 225575 CTCTCTTCATCCTTTAAAGTTTC--CCAGTGCACCAAATCTTTTGACAAATCAACTTCTT 225632 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAA 16802 || ||||||||||||| || | ||||| || ||||||| ||| ||||| | || || Sbjct 225633 CTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAA 225692 Query 16803 TAGGAAACACAACA 16816 | || || |||||| Sbjct 225693 TTGGGAAGACAACA 225706 Score = 104 bits (114), Expect = 2e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || ||| ||||||||||| | ||||||||||||||| || || ||||||||| Sbjct 220488 GACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCCT 220547 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 || | |||||| | ||||||||||||||| || |||| Sbjct 220548 TCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTTT 220584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462080863657800