Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq11254 196 5e-45 seq45074 114 1e-20 >seq11254 Length=169933 Score = 196 bits (216), Expect = 5e-45 Identities = 491/739 (66%), Gaps = 9/739 (1%) Strand=Plus/Minus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || || ||||| |||||||||| || || || |||||||| ||||| ||||| |||||| Sbjct 70967 ATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCC 70908 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCT 14020 || || || || ||||| |||| ||| ||||||| || | ||| ||| ||| || Sbjct 70907 AGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTC 70848 Query 14021 AGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTC 14080 | ||| || | ||| || || | || ||||| || || |||| | ||| Sbjct 70847 AAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTC 70788 Query 14081 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 14140 || || || ||||| || || | | || ||||| |||| |||||| | || || Sbjct 70787 ATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCA 70728 Query 14141 TCGTTTATAATAATCGTA-ATAATTTCATTAGAAGGAGGATATTTTAGATGTT---TAAA 14196 || | || |||| | | | | || || || || || || | | || Sbjct 70727 TCCGACACGATC-TCGTGTACCCTATTCTGCGAGGGTTTATGCTTCAGGTGGTCGTTGAA 70669 Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256 || || || ||||| | | | || | || ||||| ||||| || || ||||| || Sbjct 70668 AAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAA 70609 Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316 ||||| || ||||| | |||||||| ||||||||||| |||||||| || || || Sbjct 70608 CGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGA 70549 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 |||||| || || || || | ||||| |||| | ||| | |||| || | Sbjct 70548 AAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAA--ATTAGAATCA 70491 Query 14377 GT-TCGA-TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434 | ||| |||||| ||| | ||||||| | || || | || || || ||||| Sbjct 70490 GAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCT 70431 Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494 || || || | || || || || | || | | ||| | ||||| || | ||| Sbjct 70430 ATTGCGTTTAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAG 70371 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 || |||||||||||||||||||||||||| || |||||||| || |||||| || | ||| Sbjct 70370 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCT 70311 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 |||| | || || || |||| || | || | ||||| ||||| || || || Sbjct 70310 TCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCG 70251 Query 14615 CTAGCTGCAAAAAATGCCA 14633 || || ||||| || |||| Sbjct 70250 CTTGCAGCAAAGAAAGCCA 70232 >seq45074 Length=316632 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||| ||||| |||||||| || || || | || ||||| | |||||| |||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||| || || || || || || ||||| || |||||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | || ||| || | | ||| ||||| | ||||||||| |||||| || | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||| | ||| | | | |||||||||||| ||||| || || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Score = 113 bits (124), Expect = 4e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 13897 AGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACC 13956 ||| || || ||||| ||||||||||| | |||||| |||||||| ||||| ||||| || Sbjct 220487 AGACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCC 220546 Query 13957 TTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 ||||||||| || | |||||||||||||||||| ||| Sbjct 220547 TTCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTT 220583 Score = 93.3 bits (102), Expect = 4e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||||| || |||||||||||||| || |||||||| ||||| || Sbjct 224462 AATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCTATTTG 224521 Query 14533 AAAACCATAAAAACATCTAGCTTC 14556 || ||||| |||||||| ||||| Sbjct 224522 GAAGCCATAGAAACATCTTGCTTC 224545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481895975519640