Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11254 159 3e-34 seq35982 116 3e-21 seq45074 114 1e-20 >seq11254 Length=169933 Score = 159 bits (176), Expect = 3e-34 Identities = 573/888 (65%), Gaps = 16/888 (2%) Strand=Plus/Plus Query 57552 CCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACC 57611 || ||| ||| ||||| || | || |||||||| |||| || |||| |||||| Sbjct 70087 CCCATTAGATACCCAGATATATTTAAGATGTACAAGCAGGCCCTGGCTTCGTATTGGACT 70146 Query 57612 GTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCT 57668 || ||||| || ||| |||| ||| | |||||| | | | || ||| Sbjct 70147 GTAGAAGAGGTTGACTTGTCAGTAGATGTTCAAGATTGGCAGAACAAATTGAACGAAAAA 70206 Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 || | || || ||| | | |||| || || || ||| ||| || || |||||| Sbjct 70207 GAACGCAAGTTCATTTCGTCCATTCTGGCTTTCTTTGCTGCAAGCGACGGCATCGTTAAC 70266 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 || || | | | || |||| | ||||| || | | || || | || |||||| Sbjct 70267 GAAAACCTAGCACAGAGGTTTTGTAATGAAGTCCAGTTTCCAGAAGCCAAATCTTTTTAC 70326 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 |||||||| | ||||| |||||| | || || |||||||| | | || ||||| Sbjct 70327 GGATTTCAGATTGCCATGGAAAACATACACTCTGAAATGTACAGCTTGATGATAGATACT 70386 Query 57849 TACGTGAAGGACAACG-ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-G 57906 | | || || | ||| || || || | ||||| || ||||| || || | Sbjct 70387 TTTATTAAAGATCCTGTACGTAAAGACCAGT-TGCTAAACGCAATAGAAACCATACCTTG 70445 Query 57907 CGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGT 57963 || || |||||||| | ||| | || || |||||| | || | | | | | Sbjct 70446 CGTTCAG-AAGAAGGCCAAATGGGCCATAAATTGGATACA---CGATTCTGATTCTAATT 70501 Query 57964 TCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTG 58023 | |||| | | || | || || |||| || ||||| || |||||||| || || |||| Sbjct 70502 TTGCCGTGCGACTGCTAGCATTTGCCGTGGTAGAAGGCATCTTCTTTTCTGGTAGTTTTG 70561 Query 58024 CGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGT 58083 | ||||| |||||| | |||||||| || || ||||| || | ||||| ||||||||| Sbjct 70562 CTGCAATTTTTTGGTTAAAGAAACGAGGTCTCATGCCGGGTTTAACGTTCAGCAACGAGC 70621 Query 58084 TGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACA 58140 | || | || || ||| | || | | ||||| |||||| | | || ||| Sbjct 70622 TAATCAGTAGGGATGAAGGTTTACACTATCAATTTGCCTGCCTACTTTTCAACGACCACC 70681 Query 58141 TTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCG 58200 | ||||||| ||| | || | | || || | | || || || ||| | Sbjct 70682 TGAAGCATAAACCCTCGCAGAATAGGGTACACGAGATCGTGTCGGATGCCGTTTTGATAG 70741 Query 58201 AAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGA 58260 || | |||||| | || ||||| |||| || || | || |||||||| ||| Sbjct 70742 AACAAGAGTTTTTGACGGAAGCGTTACCCGTCAAACTGATTGGAATGAACAACACCATGA 70801 Query 58261 TGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTC 58320 ||| |||||||||| ||||| ||||||||||| || || ||| | || | Sbjct 70802 TGTGGCAGTACATTGAATTTGTAGCCGACAGACTGCTGACAGATTTGAATTATGAAAAAC 70861 Query 58321 ATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAA 58380 ||||| || |||||||||| |||| ||| | ||||| || || ||||| || | Sbjct 70862 TGTACAATTCGTCAAATCCGTTTAATTTCATGGAGAACATCTCCCTGGAAGGCAAAACCA 70921 Query 58381 ACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGA 58428 ||||||| ||||| | || | |||||||||| || ||||||| Sbjct 70922 ACTTTTTTGAAAAGAGGGTCGGTCAATATCAAAAGATGGGGGTGATGA 70969 Score = 127 bits (140), Expect = 2e-24 Identities = 369/560 (66%), Gaps = 16/560 (3%) Strand=Plus/Minus Query 23010 ACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACT 23069 ||||||| | ||||| || || |||||||| ||| | | |||| | | || | Sbjct 72493 ACTTGTTTAAAGCGATGGATGCTAGATTGCAGACGCCGATTTCGTGGCGGTCACTATAAT 72434 Query 23070 CTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTT 23129 || | || | || || ||||||| ||| |||| ||||||| |||||| || Sbjct 72433 GTATGACCTCCGCGCACAGGTTGCTACTCTTGATCGGTCCCAAATGTTGATGGTTGGATT 72374 Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGC-GTGCCCGTCTCGACCTGCGACTCG 23188 | | ||||| |||||||| | ||||||||| ||||| || || |||||| | Sbjct 72373 TCCCGTTGCAGTTGTCCTTGTACAACATGTACGGGAGTGCCTGTTTCCGTCTGCGAACTG 72314 Query 23189 ATGATCGCTCGCCACATAGT-CTGAGCGTGAAC---ACGTCGCACGTACCTGCCTTCTTC 23244 || || || ||||| ||| | | ||| | || ||| || | | | | || || Sbjct 72313 ATTATGGCATACCACA-AGTGCCGCGCGCGCACGACACGATTCATTTTCTTACTGTCGTC 72255 Query 23245 C---TCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGG 23301 | ||||| | ||| | | ||||| || |||| ||||||| | || ||| Sbjct 72254 CGCTTCGTATCTCGTGTAGAGTTCTTCAAACTCCTCACCCCAACAGTCCGAGAGACCGTA 72195 Query 23302 CGATTGCATCGGACACATGAGACTCCA--CATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 ||| |||| |||| | |||| | ||| || | ||| ||||| ||||||| Sbjct 72194 ACATTCGTCCGGAGACATCAATGTCCAGTCCTTG--TCCTCTTCCACGCGCTTCATAAAC 72137 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || || || ||||| || ||||| |||| || | || | | | || || || || ||| Sbjct 72136 AGGTCTGGAATCCACAGTGCGTAAAACAAGTCTCTCGCCCTCTCTTCTTCGTTTCCAGTG 72077 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 || || ||| | | ||| ||||| |||||||| ||||| || || ||||| | |||| Sbjct 72076 TTTTTCTTCCACTGCAAGAAGTCAAACACGTCGAGGTGCCAAGGTTCCAGGTACATGGCA 72017 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 | || ||| |||||| ||||||||||| | |||| | |||||| | ||| |||| Sbjct 72016 ATGGCTCCCATTCTCTT---GCCGCCCTGATTGGCGTATCTGGCCGTATCGTTAAACACC 71960 Query 23540 CTTAGCATCGGCACGAGACC 23559 | | ||| || || | ||| Sbjct 71959 TTCAACATGGGAACTATACC 71940 >seq35982 Length=112201 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| || || | || || ||||| || Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | ||| || || ||||| | || || || ||| Sbjct 104936 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 104995 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| || ||||| | || || ||||||||| Sbjct 104996 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAAC 105055 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || |||||| |||| | ||| |||| || |||| Sbjct 105056 ATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGGTA 105104 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||| ||||||| ||||| || || | || || ||||| || Sbjct 104420 ATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATCT 104479 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | || || || ||||| | || || || ||| Sbjct 104480 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104539 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| || ||||| | || || || || ||| Sbjct 104540 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104599 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| || || |||||| |||| | ||| |||| || |||| Sbjct 104600 ATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGGTA 104648 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| || || | || || ||||| || Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | || || || ||||| | || || || ||| Sbjct 105164 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 105223 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| || ||||| | || || ||||| ||| Sbjct 105224 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAAC 105283 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| ||||| |||||| |||| | ||| |||| || |||| Sbjct 105284 ATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGGTA 105332 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || |||||||| ||||| |||||| | || || ||||| || Sbjct 104192 ATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCA 104251 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || || | ||| ||| || || || | || || || ||| Sbjct 104252 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAG 104311 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||||||||| || ||||| | || || || || ||| Sbjct 104312 CAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104371 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || |||||| |||| | ||| |||| || || Sbjct 104372 ATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGG 104418 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| || || | || || ||||| || Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | || || || ||||| | || || || ||| Sbjct 104708 GACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104767 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| || ||||| | || || || || ||| Sbjct 104768 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAAC 104827 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || |||||| |||| | ||| |||| || |||| Sbjct 104828 ATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGGTA 104876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || ||||| ||||| || || | || || ||||| || Sbjct 105332 ATGCAAATTTTCGTCAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCT 105391 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | ||| || || ||||| | || || || ||| Sbjct 105392 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 105451 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| || || ||||| ||||| || ||||| Sbjct 105452 CAACGTCTTATCTTTGCTGGGAAACAATTAGAAGA 105486 >seq45074 Length=316632 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || || ||| | ||| | || ||||| || ||||||| | || || ||| | |||| Sbjct 225741 GAAGAGCCATTGTTGAAGGACAATCCTCGACGATTTGTTGTCTTCCCAATTCAGTATCAC 225682 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||||||| | |||||||| ||||||||||| || |||||||| | |||||||| || Sbjct 225681 GACATTTGGCAAATGTACAAGAAGGCAGAAGCCTCTTTTTGGACTGCAGAAGAAGTTGAT 225622 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 |||| || ||| || | ||||| | | || || |||||| |||| ||| Sbjct 225621 TTGTCAAAAGATTTGGTGCACTGGGAAACTTTAAAGGATGAAGAGAGACATTTCATTTCC 225562 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || || ||||| || || || || ||||| ||||| || || ||| |||| Sbjct 225561 CATGTTTTGGCATTCTTTGCTGCTAGTGATGGAATTGTAAATGAAAATCTGGT 225509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445350873278160