Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11254 230 3e-55 seq45074 138 1e-27 seq66969 127 3e-24 seq36930 89.7 6e-13 >seq11254 Length=169933 Score = 230 bits (254), Expect = 3e-55 Identities = 528/786 (67%), Gaps = 13/786 (2%) Strand=Plus/Minus Query 33231 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTGAGACATAACTCCCAT 33289 ||| ||||||| || |||||| | ||| || | || | ||| | ||| || ||||| Sbjct 71012 TTTTTTTAAAATTCTTCATCTATCGTAAA-TGTTCGTGTATCT---GTCATCACCCCCAT 70957 Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||||| |||| ||| || | ||||| ||||| || ||||| ||||||| || || || Sbjct 70956 CTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTT 70897 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 |||||||||| ||||||||| | |||||| | ||||| | | ||| || | | Sbjct 70896 CTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTCAAATCTGTCAG 70837 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 || ||| || || || ||||| || || |||||| |||||||| || || Sbjct 70836 CAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAG 70777 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 ||| || || | || | || | ||| |||||||| || | || |||| | | || Sbjct 70776 TTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGAT 70717 Query 33530 AAA-TCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTT---TAAACATCAAACATG 33585 | || | |||| | ||| ||| | || | | || | | || | Sbjct 70716 CTCGTGTACCCTATTCTGCGAG-GGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGGCAGG 70658 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | || | |||| | ||| || || ||||| |||| ||||| ||||| | || | Sbjct 70657 CAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCG 70598 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| || || || || || | |||||| || | ||| || || ||||||||||| | Sbjct 70597 GCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGC 70538 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTG--TCATGTATCC 33762 ||||||| | ||||| || | |||| | | || || | | | || ||||||| Sbjct 70537 CTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGTATCC 70478 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | ||| ||||| | ||||||||| | || ||||| || |||||||| || || | | Sbjct 70477 AATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTTAGCA 70418 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33882 | || ||| | |||||||| | ||||||| |||| | || |||||||| | Sbjct 70417 ACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATTTCAG 70358 Query 33883 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 33942 | || |||||||| ||||| |||||||||||||| ||| || | || || | || ||| | Sbjct 70357 AGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAACTGGA 70298 Query 33943 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 |||| ||||||| | | ||||| ||||| || || || || || || || ||||| | Sbjct 70297 CTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCAAAGA 70238 Query 34003 ACGCCA 34008 | |||| Sbjct 70237 AAGCCA 70232 >seq45074 Length=316632 Score = 138 bits (152), Expect = 1e-27 Identities = 163/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || ||||| || | ||| ||| || || || || ||||| | || ||||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | || || || || || || || ||||| ||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 33724 CAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | || ||||||| ||||| | || | |||| |||||| || |||||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 | |||| ||||||||| ||||| ||||| |||||||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 |||||| || ||||| ||||| ||||| || || | ||||| ||||| || |||||||| Sbjct 220487 AGACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCC 220546 Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAt 33385 ||||| ||| || | |||||| |||||||| || || ||||||||||| Sbjct 220547 TTCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTTTCCACATTGTAAAT 220597 >seq66969 Length=194959 Score = 127 bits (140), Expect = 3e-24 Identities = 174/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 |||||||| ||| ||||| || |||||| || | || | ||||||||||| ||| Sbjct 45359 GTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGGA 45418 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCA 63295 ||||||| | ||||||||| | | ||| || || |||||||| | || |||||||| Sbjct 45419 CACATCAGAGTCCACTCTCCAT-TGCTTTCTACACGCTTCATAAACAAGTCTGGAATCCA 45477 Query 63296 AAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 | || ||| |||||||| || | ||| | || || |||||||| ||||| ||| || Sbjct 45478 CATGGC-ATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACAAT 45536 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 | ||||| | | ||||||| |||||| || |||| ||| || || | | |||| || Sbjct 45537 CAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGG 45594 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| | ||||||||||| || |||||||| ||| | || || |||||||| |||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| ||||| ||||| || || ||||| |||||||||||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | |||| ||| ||||| | |||||| || | | ||| | || ||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 |||||| |||| || |||||||| ||| ||||| || |||| |||||| ||||||||| Sbjct 38583 GATCCTTCATAGGTCTCATATGGCCCTAATTTCTCTGCAAGTTCACAACTGGCCTCTAAT 38642 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||| | | |||||| ||||| || | || ||||| | || |||| | || ||| Sbjct 38643 GCAGCAAAGTAAATGCAGTCAAATATTTCTTTGTTTAGTTTCTGGGCTTGCTCACTCTCA 38702 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||| | | | | ||| || || || || | ||| || || || || || |||||| Sbjct 38703 AAAGGAAACCTCATTAAAATGAAAGCATCAGCAAGTCCCTGCACTCCTATTCCAATAGGT 38762 Query 62799 CTATGTCTCTTATTAGA 62815 |||||||| |||||| Sbjct 38763 CTATGTCTAAAATTAGA 38779 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| |||||||| |||||||||||||| | || || |||||||| ||||| | ||| | Sbjct 30633 TACCTGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTAT 30692 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| || || ||||||||||| || || || ||||| || || | || | Sbjct 30693 AGATTCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAG 30752 Query 62507 ACTATTTCTAAGACC 62521 || ||||||| ||| Sbjct 30753 GCTGTTTCTAACACC 30767 >seq36930 Length=140287 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 156119 TTCCCGATTTTGTAGTAGATGATCCGAAACAATCTCAGATATGGGAAATTTCAGGAGCAG 156178 |||| || ||||| || | ||||| || ||||| | |||||||| ||||||| Sbjct 114766 TTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAATAATGGGAGCAG 114825 Query 156179 AGTTTACATCTTCCAAGTCACATACAGCGAATGGAATATCAATTAGATTTCCTAGATTTA 156238 |||||| ||||| ||||||||||| |||| ||||| || |||||||| | || Sbjct 114826 AGTTTAGTCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGATTTCCACGTATTG 114885 Query 156239 CTAGGATTAGAGAAGATAAAACGTGGAAA 156267 ||| ||||||| |||||||| ||| || Sbjct 114886 CTAAAGTTAGAGACGATAAAACATGGGAA 114914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629230507651440