Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11254 221 1e-52 seq45074 145 7e-30 seq66969 123 2e-23 >seq11254 Length=169933 Score = 221 bits (244), Expect = 1e-52 Identities = 596/903 (66%), Gaps = 13/903 (1%) Strand=Plus/Minus Query 11319 TATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCT 11378 ||| ||| | |||||||||||||||||||| || || | ||| ||||| || || | Sbjct 70975 TATCTGTCATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTT 70916 Query 11379 TACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTT 11438 | ||||| || || || | |||||| || |||| ||||| | |||| | | ||||| Sbjct 70915 TGCCTTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTT 70856 Query 11439 CACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAAC 11498 || || || ||||| | | ||| || || || ||||| || ||||| |||| | Sbjct 70855 CATAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGG 70796 Query 11499 AACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATAT 11558 ||||| || || || | || || | || | ||||||||||| | |||||| Sbjct 70795 TGTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCA 70736 Query 11559 TAACCGCATCAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGT 11617 ||| ||||| | ||| ||| || | || || ||| ||| | || Sbjct 70735 AAACGGCATCCGACACGATCT-CGTGTACCCTATTCTGCGAGGGTTTATGCTTCAGGTGG 70677 Query 11618 T---TAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674 | | || | || || ||||| | | | ||||||||||| || ||||| ||||| || Sbjct 70676 TCGTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCG 70617 Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734 || || ||||| || ||||| | |||||||| |||| |||||| || |||||||| Sbjct 70616 TTGCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAA 70557 Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA 11792 |||||||||||| || || || || | |||||||||| | || | || | || Sbjct 70556 CTACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTA 70497 Query 11793 CCTTGTTGCTAG-ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 | | | |||||| ||| ||||||| | || ||||| | ||||| || Sbjct 70496 GAATCAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATG 70437 Query 11852 GTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911 |||||||| ||||| | || || ||| || | |||| | | | | |||||||| Sbjct 70436 GTTTCTATTGCGTTTAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATC 70377 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 | || || |||||||| || || || |||||||| || || |||||||| || ||| || Sbjct 70376 ATCAAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGAT 70317 Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATA 12031 || |||| | |||| || || | |||| || | |||| || || || || || Sbjct 70316 TTGGCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATG 70257 Query 12032 CCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTT 12091 || || || | ||||| || || || || || || | ||| | ||| ||| Sbjct 70256 CCGTCGCTTGCAGCAAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTC-TTTTTCGTT 70198 Query 12092 -AAT---TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 ||| || | |||||| | | |||| ||| || || || ||||| || |||||| | Sbjct 70197 CAATTTGTTCTGCCAATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAATA 70138 Query 12148 ACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 |||| | || || ||||| || | ||||| | || |||| ||| | | ||| Sbjct 70137 CGAAGCCAGGGCCTGCTTGTACATCTTAAATATATCTGGGTATCTAATGGGGTATAAAAC 70078 Query 12208 GAA 12210 ||| Sbjct 70077 GAA 70075 >seq45074 Length=316632 Score = 145 bits (160), Expect = 7e-30 Identities = 165/221 (75%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || ||||| || ||||||||| || || | || ||||| | |||||| ||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||| ||||| |||||| || ||||| || || || ||||||||||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 11774 ACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCT 11830 || ||||| ||| |||| | | || || | ||||||||| |||||||| ||| Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 |||| |||||| ||| ||||||||| || || || || || Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 ||| ||||||||||| |||||||||| ||||| ||||| | | ||| || || | Sbjct 225514 ATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATG 225573 Query 12076 TTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTC 12135 | | || || | |||| | ||||| | | ||||||||||| ||||| |||||||| Sbjct 225574 TCTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAATCAACTTCTTC 225633 Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 | ||||||||| || ||| | || ||||||| ||| || || ||||||| ||| Sbjct 225634 TGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAAT 225693 Query 12196 AGGGAAAATAACGAA 12210 ||||| | ||| || Sbjct 225694 TGGGAAGACAACAAA 225708 >seq66969 Length=194959 Score = 123 bits (136), Expect = 2e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || ||||| ||||||||||| ||||||||||| || ||||| | ||| || Sbjct 30634 ACCTGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTATA 30693 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | ||| ||||||| ||||| || || |||||||| |||| || ||| Sbjct 30694 GATTCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAGG 30753 Query 37258 CTATTTCTCAATCCATGT 37275 || ||||| | |||||| Sbjct 30754 CTGTTTCTAACACCATGT 30771 Score = 113 bits (124), Expect = 4e-20 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||||| |||| | ||||||||||| || || |||||| |||| | || | | |||||| Sbjct 26493 CCAATTTCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATAT 26552 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 || ||| || ||||| ||||| ||||| || |||||||| || |||| ||| || Sbjct 26553 GAATATTCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCA--TCTTAAT 26610 Query 36977 TACATT--TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAA 37034 |||| | | || || |||||||| || ||||| || | || || | ||||||||||| Sbjct 26611 TACAGTCCTCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGGTAT 26670 Query 37035 ATC-TAAATGTT 37045 || | |||||| Sbjct 26671 CTCATCAATGTT 26682 Score = 100 bits (110), Expect = 3e-16 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 37928 TATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGAC 37987 |||| || || | ||| || | |||||| ||| ||| || |||||||| ||||| Sbjct 45360 TATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGGAC 45419 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 |||| |||| ||| ||| ||| ||||||| || | |||||| || || || | ||| | Sbjct 45420 ACATCAGAGTCCACTCTCCATTGCTTTCTACACGCTTCATAAACAAGTCTGGAATCCACA 45479 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 ||| |||| ||| | | ||| | ||||| || ||| ||||| |||| | | Sbjct 45480 TGGCATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTT-CTTACAATCA 45538 Query 38108 -GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 | ||||| ||||||||||| ||||| || || | || || | | ||||||||||| Sbjct 45539 AGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGGTCT 45597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468088058751120