Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11254 221 2e-52 seq45074 143 4e-29 seq66969 123 3e-23 seq36930 89.7 7e-13 >seq11254 Length=169933 Score = 221 bits (244), Expect = 2e-52 Identities = 528/787 (67%), Gaps = 15/787 (2%) Strand=Plus/Minus Query 35807 TTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCT-TCTTGAGACATAACTCCCAT 35865 ||| ||||||| || |||||| | ||| || | || | ||| | ||| || ||||| Sbjct 71012 TTTTTTTAAAATTCTTCATCTATCGTAAA-TGTTCGTGTATCT---GTCATCACCCCCAT 70957 Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||||| |||| ||| || | ||||| ||||| || ||||| ||||| | || || || Sbjct 70956 CTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTT 70897 Query 35926 TTCCATGAAATCGAATGGATT-GATAACATTATAAAtttttttAAATCCCAATTCAGAAA 35984 |||||||||| || ||||| || | ||| || | ||||| | | ||| || | | Sbjct 70896 CTCCATGAAATTAAACGGATTTGACGA-ATTGTACAGTTTTTCATAATTCAAATCTGTCA 70838 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 || ||| || || |||||||| || || |||||| |||||||| || | Sbjct 70837 GCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCA 70778 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 |||| || || | || | || | ||| |||||||| || | || || || | | | Sbjct 70777 GTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGA 70718 Query 36105 TAGATATTACTGT-TTCTTCACTCGGTGGATACAATAAATGTT---TAAACATCAAACAT 36160 | ||| | |||| | ||| || | | || | | || | | || Sbjct 70717 TCTCGTGTACCCTATTCTGCGAG-GGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGGCAG 70659 Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 || || | |||||| ||| || || ||||| |||| |||||| ||||| | || Sbjct 70658 GCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCC 70599 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||| || || || || || | |||||| || | ||||| ||||||||||| || Sbjct 70598 GGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATG 70539 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTG--TCATGTATC 36337 |||||||| | ||||| || | |||| | | || || | | | | || |||||| Sbjct 70538 CCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGTATC 70479 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || ||| ||||| | ||||||||| | || ||||| || || ||||| || || | Sbjct 70478 CAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTTAGC 70419 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 | | || ||| | |||||||| | | ||||| |||| | || |||||||| Sbjct 70418 AACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATTTCA 70359 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 || || |||||||| ||||| || ||||||||||| ||| || | || || | || ||| Sbjct 70358 GAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAACTGG 70299 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 ||||| ||||||| | | ||||| ||||| || || || ||||| || || ||||| Sbjct 70298 ACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCAAAG 70239 Query 36578 AACGCCA 36584 || |||| Sbjct 70238 AAAGCCA 70232 >seq45074 Length=316632 Score = 143 bits (158), Expect = 4e-29 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || ||||| || | ||| || || || || || ||||| | || ||||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 36300 CAATAAGTCTCTCTCCATAACCGGCA---CTGTCATGTATCCACTTTTGAGCCCAATCGG 36356 | | || ||||||| ||||| | ||| | |||| |||||| || |||||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 | |||| ||||||||| |||||||| || || ||||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| || || ||||| | ||||| |||||||| || || || ||||| ||||| Sbjct 224457 TCTTTAATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCT 224516 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 ||||| || || ||||||||||| || || ||| ||| ||||| Sbjct 224517 ATTTGGAAGCCATAGAAACATCTTGCTTCAGTAGCCTGCACTTC 224560 >seq66969 Length=194959 Score = 123 bits (136), Expect = 3e-23 Identities = 174/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 65969 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 66028 ||||||||| ||| ||||| || |||||| || | || ||||||||||||| || Sbjct 45358 TGTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGG 45417 Query 66029 ACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCC 66087 |||||||| | ||||||||| | | ||| || || |||||||| | || ||||||| Sbjct 45418 ACACATCAGAGTCCACTCTCCAT-TGCTTTCTACACGCTTCATAAACAAGTCTGGAATCC 45476 Query 66088 AAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 | | || ||| |||| ||| || | ||| | || || |||||||| ||||| ||| | Sbjct 45477 ACATGGC-ATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACAA 45535 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || ||||| | | |||||| |||||| || |||| ||| || || | | |||| || Sbjct 45536 TCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGG 45594 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| | ||||||||||| || |||||||| ||| | || || |||||||| |||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| ||||| ||||| || || ||||| |||||||||||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | |||| ||| ||||| | |||||| || | | ||| | || ||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || ||||| |||||||||||||| | || || |||||||| ||||| | ||| | Sbjct 30633 TACCTGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTAT 30692 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 ||| |||||||| || || ||||||||||| || || || ||||| || || | || | Sbjct 30693 AGATTCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAG 30752 Query 65300 ACTATTTCTAAGACC 65314 || ||||||| ||| Sbjct 30753 GCTGTTTCTAACACC 30767 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 |||||| |||| || || ||||| ||| ||||| || ||||||||||| ||||||||| Sbjct 38583 GATCCTTCATAGGTCTCATATGGCCCTAATTTCTCTGCAAGTTCACAACTGGCCTCTAAT 38642 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 ||| | | |||||| || || || | || ||||| | || |||| | || ||| Sbjct 38643 GCAGCAAAGTAAATGCAGTCAAATATTTCTTTGTTTAGTTTCTGGGCTTGCTCACTCTCA 38702 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||| | | | | ||| || || || || | ||| || || || || || |||||| Sbjct 38703 AAAGGAAACCTCATTAAAATGAAAGCATCAGCAAGTCCCTGCACTCCTATTCCAATAGGT 38762 Query 65592 CTATGTCTCTTATTAGA 65608 |||||||| |||||| Sbjct 38763 CTATGTCTAAAATTAGA 38779 >seq36930 Length=140287 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 159310 TTCCCGATTTTGTAGTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAACAG 159369 |||| || ||||| || | ||||| || ||||| | | |||||||| ||| ||| Sbjct 114766 TTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAATAATGGGAGCAG 114825 Query 159370 AGTTTACATCTTCCAAGTCACATACAGCAAATGGAATATCGATTAGATTTCCTAGATTTA 159429 |||||| ||||| ||||||||||| |||| ||||| || |||||||| | || Sbjct 114826 AGTTTAGTCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGATTTCCACGTATTG 114885 Query 159430 CTAGGATTAGAGAAGATAAAACGTGGAAA 159458 ||| ||||||| |||||||| ||| || Sbjct 114886 CTAAAGTTAGAGACGATAAAACATGGGAA 114914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657559275997320