Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq35982 136 4e-27 seq11254 100 3e-16 >seq35982 Length=112201 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || || |||| ||| |||||||| || ||||||||||| | Sbjct 105102 CCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGAC 105043 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | |||||||||||| |||| |||||||||||||| ||||| Sbjct 105042 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104983 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | ||||| | ||| | ||||| | || ||||| Sbjct 104982 ATACCTTCTTTATC-TTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCAC 104924 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | || || || || | ||||| ||||| ||||||||| || Sbjct 104923 TTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCATACCT 104872 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || || |||| || |||||||| || ||||| ||||| | Sbjct 105330 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGAC 105271 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | |||||||||||| |||| |||||||||||||| ||||| Sbjct 105270 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105211 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||| || ||||| | ||| | ||||| | || ||||| Sbjct 105210 ATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACT 105151 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | || || ||||| | ||||| ||||| ||||||||| || Sbjct 105150 TCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCATACCT 105100 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || || |||| || |||||||| |||||||| || || | Sbjct 104646 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGAC 104587 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | |||||||||||| |||| |||||||||||||| ||||| Sbjct 104586 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104527 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||| || ||||| | ||| | ||||| | || ||||| Sbjct 104526 ATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACT 104467 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| ||||| || || |||||||| Sbjct 104466 TCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || || |||| || |||||||| || ||||| || || | Sbjct 104874 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGAC 104815 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | |||||||||||| |||| |||||||||||||| ||||| Sbjct 104814 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104755 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||| || ||||| | ||| | ||||| | || ||||| Sbjct 104754 ATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACT 104695 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | || || || || | ||||| ||||| ||||||||| || Sbjct 104694 TCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCATACCT 104644 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || |||| |||||||| ||||| |||| || |||||||| || ||||| || || Sbjct 105907 TGTCCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCT 105848 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || ||| | ||||| | |||||||||||| |||| |||||||||||||| ||| Sbjct 105847 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 105788 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTC 139704 || || |||||||| || ||| |||| | ||||| | ||| | ||||| Sbjct 105787 GGAATACCTTCTTTATC-TTGAATTTTAGCTTTTACGTTTTCGATAGTGTC 105738 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || || |||| || |||||||| || ||||| || || || ||| | ||| Sbjct 104403 AAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCT 104344 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | ||||| |||||| |||| |||||||||||||| ||||| || || ||||| || Sbjct 104343 TCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATTCCCTCTTTATCC 104284 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 |||||| |||| | ||| | ||||| | || || || |||| ||| | || Sbjct 104283 TGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACTTCAAGGGTGATAGTT 104224 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || |||| ||||| || ||||| ||||| Sbjct 104223 TTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 102 bits (112), Expect = 8e-17 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| |||||| |||| |||||||||||||| ||||| || |||||||| Sbjct 105486 TCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTA 105427 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||||| | ||| | ||||| | || ||||| |||| || | Sbjct 105426 TC-TTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTAT 105368 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || || || | ||||| ||||| ||||||||| || Sbjct 105367 TGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCATACCT 105328 >seq11254 Length=169933 Score = 100 bits (110), Expect = 3e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 52849 ATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACC 52908 || ||| |||||||||| ||||| || |||||||| | || | || |||||| ||| Sbjct 70738 ATAGAACAAGAGTTTTTGACGGAAGCGTTACCCGTCAAACTGATTGGAATGAACAACACC 70797 Query 52909 ATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCG 52968 |||||||| ||||||| || ||||| || ||||||||| ||| ||| | | | Sbjct 70798 ATGATGTGGCAGTACATTGAATTTGTAGCCGACAGACTGCTGA--CAGATTTGAATTATG 70855 Query 52969 AAATAC--TATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCA 53026 ||| || || ||| || || || ||| || ||| | ||||| || || || |||| Sbjct 70856 AAAAACTGTACAATTCGTCAAATCCGTTTAATTTCATGGAGAACATCTCCCTGGAAGGCA 70915 Query 53027 AAACAAACTTTTTCGA 53042 |||| |||||||| || Sbjct 70916 AAACCAACTTTTTTGA 70931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495601587741600