Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11254 257 2e-63 seq66969 149 9e-31 seq45074 147 3e-30 seq36930 89.7 7e-13 >seq11254 Length=169933 Score = 257 bits (284), Expect = 2e-63 Identities = 534/786 (68%), Gaps = 13/786 (2%) Strand=Plus/Minus Query 49609 TTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCT-TCTTGAGACATAACTCCCAT 49667 ||| ||||||| || |||||| | ||| || | | | ||| | ||| || ||||| Sbjct 71012 TTTTTTTAAAATTCTTCATCTATCGTAAA-TGTTCGTGTATCT---GTCATCACCCCCAT 70957 Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||||| |||| ||| || | ||||| ||||| || ||||| ||||||| || || || Sbjct 70956 CTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTT 70897 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||||||| ||||||||| | ||| || | ||||| | | ||| || | | Sbjct 70896 CTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTCAAATCTGTCAG 70837 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || ||| || || |||||||| || || |||||| |||||||| || || Sbjct 70836 CAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAG 70777 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 ||| || || | || | || | ||| |||||||| || | || ||||| | | || Sbjct 70776 TTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGAT 70717 Query 49908 AGA-TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTT---TAAACATCAAACATG 49963 | || | |||| | ||| |||| | || | | || | | || | Sbjct 70716 CTCGTGTACCCTATTCTGCGAG-GGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGGCAGG 70658 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | || | |||| | ||| || || ||||| ||||| |||||| ||||| | || | Sbjct 70657 CAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCG 70598 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083 |||| || || || || || | |||||| || | ||||| |||||||||||||| | Sbjct 70597 GCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGC 70538 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-CTG--TCATGTATCC 50140 ||||||| ||||||| || | |||| | | || || | | | | || ||||||| Sbjct 70537 CTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGTATCC 70478 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | ||| ||||| | ||||||||| | || ||||| || |||||||| || || | | Sbjct 70477 AATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTTAGCA 70418 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 | || ||| | |||||||| | ||||||| |||| | || |||||||| | Sbjct 70417 ACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATTTCAG 70358 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 | || |||||||| ||||| |||||||||||||| ||| || | || || | || ||| | Sbjct 70357 AGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAACTGGA 70298 Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 |||| ||||||| | | |||| ||||| || || || ||||| || || ||||| | Sbjct 70297 CTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCAAAGA 70238 Query 50381 ACGCCA 50386 | |||| Sbjct 70237 AAGCCA 70232 >seq66969 Length=194959 Score = 149 bits (164), Expect = 9e-31 Identities = 181/242 (75%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 79848 TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGG 79907 |||||| || ||| ||||| || |||||| ||| | ||| ||||||||||| | || Sbjct 45358 TGTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGG 45417 Query 79908 ACACATCAACGACCACTCTCCATCATCCTT--TACTCGTTTCATAAAGAGATCAGGAATC 79965 |||||||| | ||||||||||| | ||| ||| || |||||||| | || |||||| Sbjct 45418 ACACATCAGAGTCCACTCTCCAT--TGCTTTCTACACGCTTCATAAACAAGTCTGGAATC 45475 Query 79966 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 80024 || | || ||| |||||||| || | ||| | ||| || |||||||| ||||| ||| Sbjct 45476 CACATGGC-ATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACA 45534 Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 ||| ||||| | | ||||||| |||||| || |||| ||| || || | | |||| || Sbjct 45535 ATCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGG 45594 Query 80085 TC 80086 || Sbjct 45595 TC 45596 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| | || |||||||| || |||||||| ||| | || || |||||||| |||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| ||||| ||||| || || ||||| |||||||||||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | |||| ||| ||||| | |||||| || | | ||| | || ||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 Score = 109 bits (120), Expect = 8e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || ||||| |||||||||||||| | || || |||||||| ||||| | ||| | Sbjct 30633 TACCTGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTAT 30692 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||||||||| || || ||||||||||| || || |||||||| || || | || | Sbjct 30693 AGATTCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAG 30752 Query 79179 ACTATTTCTAAGACC 79193 || ||||||| ||| Sbjct 30753 GCTGTTTCTAACACC 30767 >seq45074 Length=316632 Score = 147 bits (162), Expect = 3e-30 Identities = 166/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || ||||| || ||||| || || || || || ||||| | || ||||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 50102 CAACAAGTCTCTCTCCATAA-CTG--GCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 | |||| ||||||| ||||| ||| | |||| |||||| || |||||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 | |||| ||||||||| ||||| ||||| |||||||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 |||||| || ||||| ||||| ||||| || || | ||||| ||||| || |||||||| Sbjct 220487 AGACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCC 220546 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 49763 ||||| ||| || | |||||| |||||||| || || ||||| ||||| Sbjct 220547 TTCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTTTCCACATTGTAAAT 220597 >seq36930 Length=140287 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 174558 TTCCCGATTTTGTAGTAGAGGATCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAG 174617 |||| || ||||| || | ||||| || ||||| | |||||||| ||||||| Sbjct 114766 TTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAATAATGGGAGCAG 114825 Query 174618 AGTTTACATCTTCCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTA 174677 |||||| ||||| ||||||||||| |||| ||||| || |||||||| | || Sbjct 114826 AGTTTAGTCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGATTTCCACGTATTG 114885 Query 174678 CTAGGATTAGAGAAGATAAAACGTGGAAA 174706 ||| ||||||| |||||||| ||| || Sbjct 114886 CTAAAGTTAGAGACGATAAAACATGGGAA 114914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717599256759720