Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq11254 190 2e-43 seq45074 120 3e-22 >seq11254 Length=169933 Score = 190 bits (210), Expect = 2e-43 Identities = 491/741 (66%), Gaps = 13/741 (2%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || ||||| |||||||||| || || || |||||||| ||||| ||||| |||||| Sbjct 70967 ATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCC 70908 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 || || || || ||||| |||| ||| |||||| || | ||| ||| ||| || Sbjct 70907 AGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTC 70848 Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 | ||| || | ||| || || | ||| ||||| || || |||| | ||| Sbjct 70847 AAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTC 70788 Query 13749 ATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCC 13808 || || || ||||| || || | | || ||||| |||| |||||| | || || Sbjct 70787 ATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCA 70728 Query 13809 TCTTTTATAATAAT-TGTAA--TAATCTCATTAGAAGGAGGATATTTTAGATGTT---TA 13862 || | || |||| || ||| || || || || || || | | Sbjct 70727 TCCGACACGATCTCGTGTACCCTATTCTGC---GAGGGTTTATGCTTCAGGTGGTCGTTG 70671 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 |||| || || ||||| | | | || | || ||||| ||||| || || ||||| Sbjct 70670 AAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTG 70611 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 || ||||| || ||||| | |||||||| ||||||||||| ||||||||||| || Sbjct 70610 AACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCA 70551 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| || || || || | ||||| |||| | ||| | |||| || | Sbjct 70550 GAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAA--ATTAGAAT 70493 Query 14043 TTGT-TCGA-TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 | ||| |||||| ||| | ||||||| | || || | || || || |||| Sbjct 70492 CAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTT 70433 Query 14101 CAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14160 | || || || | || | || || | || | | ||| | ||||| || | | Sbjct 70432 CTATTGCGTTTAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCA 70373 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 |||| |||||||||||||||||||||||||| || |||||||| || ||||| || | | Sbjct 70372 AGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGG 70313 Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 |||| | | || ||||| |||| || | || | ||||| ||||| || || | Sbjct 70312 CTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGT 70253 Query 14281 CACTAGCTGCAAAAAATGCCA 14301 | || || ||||| || |||| Sbjct 70252 CGCTTGCAGCAAAGAAAGCCA 70232 >seq45074 Length=316632 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| ||||| |||||||| || || || | || ||||| | |||||| |||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| || ||||| || || || ||||| || |||||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | | || ||| || | | ||| ||||| | ||||||||| |||||| || | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 ||| | ||| | | | |||||||||||| ||||| || || |||| Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAAGAATTC 223208 Score = 113 bits (124), Expect = 4e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 13565 AGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACC 13624 ||| || || ||||| ||||||||||| | |||||| |||||||| ||||| ||||| || Sbjct 220487 AGACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCC 220546 Query 13625 TTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 ||||||||| || | |||||||||||||||||| ||| Sbjct 220547 TTCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTT 220583 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| || |||||||||| || |||||||||||||| || |||||||| ||||| || Sbjct 224462 AATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCTATTTG 224521 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || ||||| ||||| Sbjct 224522 GAAGCCATAGAAACATCTTGCTTC 224545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 ||| ||||||||| || || ||||||||||| ||||| |||||||| | | ||| | Sbjct 225510 CCAGATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGA 225569 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 | | | |||||||| || | ||| ||| | ||||| || || | ||| |||| Sbjct 225570 AATGTCTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAATCAACTT 225629 Query 14377 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14436 | || | ||||||||| || | || || || |||||| ||| || || | ||| Sbjct 225630 CTTCTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACT 225689 Query 14437 ATATAGGAAAAACTACAAATC-TCGAAGATGTTTCTTTAAGAAT 14479 || || || || ||||||| |||| ||| | ||| || ||| Sbjct 225690 GAATTGGGAAGACAACAAATCGTCGAGGATTGTCCTTCAACAAT 225733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479280815548200