Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq11254 205 9e-48 seq45074 113 4e-20 >seq11254 Length=169933 Score = 205 bits (226), Expect = 9e-48 Identities = 490/739 (66%), Gaps = 9/739 (1%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || || ||||| |||||||||| || || || |||||||||||||| ||||| |||||| Sbjct 70967 ATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCC 70908 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCT 13476 || || || || ||||| |||| || ||||||| || | ||| ||| ||| || Sbjct 70907 AGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTC 70848 Query 13477 AGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13536 | ||| | | ||| || || | ||| ||||| || || |||| | ||| Sbjct 70847 AAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTC 70788 Query 13537 ATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCC 13596 || || || ||||| || || | | || ||||| |||| |||||| | || || Sbjct 70787 ATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCA 70728 Query 13597 TCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTT---TAAAA 13653 || | || | | | | | || || || || || || | | ||| Sbjct 70727 TCCGACACGATCTCGTGTACCCTATTCTGCGAGGGTTTATGCTTCAGGTGGTCGTTGAAA 70668 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 | || || ||||| | | | || | || ||||| ||||| || || ||||| || Sbjct 70667 AGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAAC 70608 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 ||||| || ||||| | |||||||| ||||||||||| |||||||| || || ||| Sbjct 70607 GTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAA 70548 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC---GATGCTTTT 13830 ||||| || || || || | ||||| |||| ||||| | |||| || | Sbjct 70547 AAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAA 70488 Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 | || | ||||| ||| | ||||||| | || || | || || || ||||| Sbjct 70487 TCGTGT---ATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCT 70431 Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 13950 ||||| || | || || || || | || | | ||| | ||||| || | ||| Sbjct 70430 ATTGCGTTTAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAG 70371 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 || ||||||||||||||||||||||| || || |||||||| || |||||| || | ||| Sbjct 70370 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCT 70311 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 |||| | || || || |||| || | ||| | |||||| ||||| || || || Sbjct 70310 TCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCG 70251 Query 14071 CTAGCTGCAAAAAATGCCA 14089 || || ||||| || |||| Sbjct 70250 CTTGCAGCAAAGAAAGCCA 70232 >seq45074 Length=316632 Score = 113 bits (124), Expect = 4e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 13353 AGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACC 13412 ||| || || ||||| ||||||||||| | |||||| |||||||||||||| ||||| || Sbjct 220487 AGACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCC 220546 Query 13413 TTCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 ||||||||| || | |||||||||||| ||||| ||| Sbjct 220547 TTCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTT 220583 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||||| || |||||||||||||| || ||||| || ||||| || Sbjct 224462 AATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCTATTTG 224521 Query 13989 AAAACCATAAAAACATCTAGCTTC 14012 || ||||| |||||||| ||||| Sbjct 224522 GAAGCCATAGAAACATCTTGCTTC 224545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 |||||||| ||||| ||||||||||| ||||| |||||||| | | ||| || | | Sbjct 225515 TTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATGT 225574 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169 |||||||| || | ||| ||| | | ||||| || || | ||| ||||| || Sbjct 225575 CTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAATCAACTTCTTCT 225634 Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14229 | ||||||||| || | || || || |||||| ||| || || | ||| || Sbjct 225635 GCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAATT 225694 Query 14230 GGAAAAACTACAAATC-TTGAAGATGTTTCTTTAAGAATTGGCTC 14273 || || || ||||||| | || ||| | ||| || || |||||| Sbjct 225695 GGGAAGACAACAAATCGTCGAGGATTGTCCTTCAACAA-TGGCTC 225738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478142677467720