Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11254 241 2e-58 seq45074 156 6e-33 seq66969 143 4e-29 seq36930 87.8 2e-12 >seq11254 Length=169933 Score = 241 bits (266), Expect = 2e-58 Identities = 533/790 (67%), Gaps = 21/790 (3%) Strand=Plus/Minus Query 41714 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTGAGACATAACTCCCAT 41772 ||| ||||||| || |||||| | ||| || | || | ||| | ||| || ||||| Sbjct 71012 TTTTTTTAAAATTCTTCATCTATCGTAAA-TGTTCGTGTATCT---GTCATCACCCCCAT 70957 Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||||| |||| ||| || | ||||| ||||| || || || ||||||| || || || Sbjct 70956 CTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTT 70897 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 |||||||||| ||||||||| | ||| || | ||||| | | ||| || | | Sbjct 70896 CTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTCAAATCTGTCAG 70837 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 || ||| || || | ||||| || || |||||| |||||||| || || Sbjct 70836 CAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAG 70777 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 ||| || || | || | || | ||| |||||||| || | || || || | | Sbjct 70776 TTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACAC--- 70720 Query 42013 AGATCT----TACTGT-TTCTTCACTCGGTGGATACAATAAATGTT---TAAACATCAAA 42064 ||||| ||| | |||| | ||| || | | || | | || | | Sbjct 70719 -GATCTCGTGTACCCTATTCTGCGAG-GGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGG 70662 Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || | |||| | ||| ||||| ||||| |||| |||||| ||||| | Sbjct 70661 CAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAA 70602 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || || || || | |||||| || | ||||| |||||||||||| Sbjct 70601 CCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAG 70542 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTG--TCATGT 42241 || |||||||| | ||||| || | |||| | | || || | | | | || ||| Sbjct 70541 ATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGT 70482 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||| ||||| | ||||||||| | || ||||| || |||||||| || || Sbjct 70481 ATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTT 70422 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 | | | || ||| | |||||||| | | ||||| |||| | || |||||| Sbjct 70421 AGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATT 70362 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || |||||||| ||||| |||||||||||||| ||| || |||| || | || | Sbjct 70361 TCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAAC 70302 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || ||||| ||||||| | | |||| |||||||| || || ||||| || || ||| Sbjct 70301 TGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCA 70242 Query 42482 AAAAACGCCA 42491 || || |||| Sbjct 70241 AAGAAAGCCA 70232 >seq45074 Length=316632 Score = 156 bits (172), Expect = 6e-33 Identities = 167/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| ||||| || | ||| || || || || || ||||| | || ||||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 42207 CAATAAGTCTCTCTCCATAACCGGCA---CTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 | | || ||||||| ||||| | ||| | |||| |||||| || |||||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 | |||| ||||||||| ||||| ||||| |||||||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || || ||||| ||||| || ||||| || ||||| ||||| || |||| Sbjct 225514 ATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATG 225573 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 | | || || |||| | | ||| | | |||||| || | ||| |||||||| Sbjct 225574 TCTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAATCAACTTCTTC 225633 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 | | |||||||| || ||||||||||| || ||||| | ||| || || ||||| ||||| Sbjct 225634 TGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAAT 225693 Query 42631 TGGGAAAATAACAAATC 42647 |||||| | |||||||| Sbjct 225694 TGGGAAGACAACAAATC 225710 >seq66969 Length=194959 Score = 143 bits (158), Expect = 4e-29 Identities = 176/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 71931 TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGG 71990 |||||| || ||| ||||| || |||||| || | ||| ||||||||||||| || Sbjct 45358 TGTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGG 45417 Query 71991 ACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCA 72050 |||||||| | ||||||||||| | ||| || |||||||| | || |||||||| Sbjct 45418 ACACATCAGAGTCCACTCTCCATTGCTTTCTACACGCTTCATAAACAAGTCTGGAATCCA 45477 Query 72051 AAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 72109 | || ||| |||||||| || | ||| | ||| || |||||||| ||||| ||| || Sbjct 45478 CATGGC-ATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACAAT 45536 Query 72110 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 | ||||| | | ||||||| |||||| || |||| ||| || || | | |||| || Sbjct 45537 CAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGG 45594 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| | ||||||||||| || |||||||| || | || || ||||| ||||||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| ||||| || || ||||| |||||||||||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | |||| ||| ||||| | |||||| || | | ||| | || ||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || ||||| |||||||||||||| | || || |||||||| ||||| | ||| | Sbjct 30633 TACCTGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTAT 30692 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || |||||||| || || ||||||||||| || || || ||||| || || | || || Sbjct 30693 AGATTCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAG 30752 Query 71262 ACTATTTCTAAGACCATGT 71280 || ||||||| ||||||| Sbjct 30753 GCTGTTTCTAACACCATGT 30771 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 |||||| |||| || || ||||| ||| ||| || || ||||||||||| ||||||||| Sbjct 38583 GATCCTTCATAGGTCTCATATGGCCCTAATTTCTCTGCAAGTTCACAACTGGCCTCTAAT 38642 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || || | |||||| || || || | || || || | || |||| | || ||| Sbjct 38643 GCAGCAAAGTAAATGCAGTCAAATATTTCTTTGTTTAGTTTCTGGGCTTGCTCACTCTCA 38702 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||| | | | | ||| || || || || | ||| || || || || || |||||| Sbjct 38703 AAAGGAAACCTCATTAAAATGAAAGCATCAGCAAGTCCCTGCACTCCTATTCCAATAGGT 38762 Query 71554 CTGTGTCTCTTATTAGA 71570 || ||||| |||||| Sbjct 38763 CTATGTCTAAAATTAGA 38779 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||||| ||| || ||||||||||||| || || || || ||||| || ||||| Sbjct 61079 CACTAAATACTTTCTTGGTTTCCTTGTGTAAGTTAGAGACTGCAATTCTAGCTGCTAGCT 61138 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| |||||||||| || || || || ||| |||| || ||||| | |||| Sbjct 61139 GAGCATAGTCTGGATGTTTGGTTGTCATGGTAGCAGCTGTTTCAGCAGCCAGGTTATCCA 61198 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 72925 ||| || || || || || ||| | || | ||| || |||| Sbjct 61199 GTTCAACGGTCGTGACCCCTGGATACAAGCCATTGATTACTTTCA 61243 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 71742 ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801 ||||| || |||||| || || ||||||||||| || |||||||||| |||||| || || Sbjct 44484 ATATTCTACAATTTCTGTACATAGATTACTACATTTAATGGTTCCTAGATTTTGCTGGTT 44543 Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 | || |||||| || || || | ||| | ||||||||||||||| | || | Sbjct 44544 AGATTTGCGGTTACAGTGGTCTTTGTACAACATATAAGGAGTACCAGTTTCAGTTTGTGC 44603 Query 71862 TTCTATAAT 71870 ||||| || Sbjct 44604 CTCTATGAT 44612 >seq36930 Length=140287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 165907 TTCCCGATTTTGTAGTAGAGGATCCAAAACAATCTCAGATATGGGAAATTTCAGGAGCAG 165966 |||| || ||||| || | ||||| || ||||| | |||||||| ||||||| Sbjct 114766 TTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAATAATGGGAGCAG 114825 Query 165967 AGTTTACGTC-TTCAAAGTCACATACAGCAAATGGAATATCGATTAGATTTCCTAGATTT 166025 |||||| ||| ||| | ||||||||||| |||| ||||| || |||||||| | || Sbjct 114826 AGTTTA-GTCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGATTTCCACGTATT 114884 Query 166026 ACTAGGATTAGAGAAGATAAAACGTGGAAA 166055 ||| ||||||| |||||||| ||| || Sbjct 114885 GCTAAAGTTAGAGACGATAAAACATGGGAA 114914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670513589205480