Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11254 206 4e-48 seq45074 86.0 9e-12 >seq11254 Length=169933 Score = 206 bits (228), Expect = 4e-48 Identities = 562/844 (67%), Gaps = 26/844 (3%) Strand=Plus/Plus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087 |||||||| |||| | ||| || | |||||| || |||||||| || |||| || | Sbjct 70114 ATGTACAAGCAGGCCCTGGCTTCGTATTGGACTGTAGAAGAGGTTGACTTGTC--AGTAG 70171 Query 125088 CTGTAC--GATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTT 125145 ||| | |||||| ||| |||| |||| || || |||| || ||| |||| Sbjct 70172 ATGTTCAAGATTGGCAGAACAAATTGAACGAAAAAGAACGCAAGTTCATTTCGTCCATTC 70231 Query 125146 TGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACAC-GATTCTCT 125204 |||| |||||||| | ||| || ||||| ||||| || || ||| | || | | Sbjct 70232 TGGCTTTCTTTGCTGCAAGCGACGGCATCGTTAACGAAAACCTAGC-ACAGAGGTTTTGT 70290 Query 125205 CAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGA 125262 | || | ||| ||||||| | | ||||||||||| || || || || | Sbjct 70291 AATGAAGT--CCAGTTTCCAGAAGCCAAATCTTTTTACGGATTTCAGATTGCCATGGAAA 70348 Query 125263 ACGTGCACTCGGAAATGTACT-CTACACTGATTGACATGTACATTCGCGATCCGCAACGT 125321 || | ||||| ||||||||| || | |||| || | | ||| ||||| |||| Sbjct 70349 ACATACACTCTGAAATGTACAGCTTGA-TGATAGATACTTTTATTAAAGATCCTGTACGT 70407 Query 125322 AAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGG 125381 ||| || | | | |||||||| || || | || | | | || ||||| ||||| Sbjct 70408 AAAGACCAGTTGCTAAACGCAATAGAAACCATACCTTGCGTTCAGAAGAAGGCCAAATGG 70467 Query 125382 GTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCC 125441 | || ||||| | || | ||| | |||| ||||| | ||||| ||| Sbjct 70468 GCCATAAATTGGATACACGATTCTGATTCTAATTTTGCCGTGCGACTGCTAGCATTTGCC 70527 Query 125442 GCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGC 125501 | ||||| |||||||||||||| ||||||||||| || || |||||| | ||||| || Sbjct 70528 GTGGTAGAAGGCATCTTCTTTTCTGGTAGTTTTGCTGCAATTTTTTGGTTAAAGAAACGA 70587 Query 125502 GGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACAC 125561 || |||||||| || | ||| ||| |||||| | || | | || || || ||||| Sbjct 70588 GGTCTCATGCCGGGTTTAACGTTCAGCAACGAGCTAATCAGTAGGGATGAAGGTTTACAC 70647 Query 125562 TGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA-GATCCAGCGA 125620 | | | |||||| ||||| || |||| | | || || ||| | || || Sbjct 70648 TATCAATTTGCCTGCCTACTTTT---CAACGA----CCACCTGA-AGCATAAACCCTCGC 70699 Query 125621 TGAA-AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCG 125679 ||| | ||| | | || || | |||||||| |||||||||||||||| | || | Sbjct 70700 AGAATAGGGTACACGAGATCGTGTCGGATGCCGTTTTGATAGAACAAGAGTTTTTGACGG 70759 Query 125680 AATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGT 125739 || | |||| |||| ||||||| |||||| || | ||||| ||||||| || | Sbjct 70760 AAGCGTTACCCGTCAAACTGATTGGAATGAACAACACCATGATGTGGCAGTACATTGAAT 70819 Query 125740 TTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAA--CGCCAAGAA 125797 |||| || || | || ||| || |||| | || | ||||| || || || Sbjct 70820 TTGTAGCCGACAGACTGCTGACAGATTTGAATTATGAAAAACTGTACAATTCGTCA--AA 70877 Query 125798 TCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAA 125857 ||| ||| |||||||| | ||| || || || || || ||||||||||| || |||| Sbjct 70878 TCCGTTTAATTTCATGGAGAACATCTCCCTGGAAGGCAAAACCAACTTTTTTGAAAAGAG 70937 Query 125858 GGTC 125861 |||| Sbjct 70938 GGTC 70941 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/253 (69%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||| | ||||||||||| | | | || || || ||| | ||| ||||||||| Sbjct 71980 GATACGCCAATCAGGGCGGCAAGAGAATG---GGAGCCATTGCCATGTACCTGGAACCTT 72036 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| ||||| |||||||| | || | |||||| |||| ||||| | Sbjct 72037 GGCACCTCGACGTGTTTGACTTCTTGCAGTGGAAGAAAAACACTGGAAACGAAGAAGAGA 72096 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || || ||||||||||| ||||| ||| | ||||| |||| ||||||||||| | | Sbjct 72097 GGGCGAGAGACTTGTTTTACGCACTGTGGATTCCAGACCTGTTTATGAAGCGCGTGGAAG 72156 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | | |||||| | |||| || ||| | |||||| || || || |||| Sbjct 72157 AGGACAAGGACTGGACATTGATGTCTCCGGACGAATGTTACGGTCTCTCGGACTGTTGGG 72216 Query 97105 GCGAAGAGTTTGA 97117 | || |||||||| Sbjct 72217 GTGAGGAGTTTGA 72229 >seq45074 Length=316632 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 || || || ||| | |||||||| || || || || || || || || || ||||||||| Sbjct 223118 TATGCAGAGAGAGTTGTGGCATTTGCAGCAGTTGAAGGGATATTTTTCTCTGGTAGTTTT 223059 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 || || || ||||||||||| ||||| ||| | ||||| || || || |||||| || Sbjct 223058 GCAGCTATATTTTGGCTCAAAAAGCGAGGAATTATGCCTGGTCTTACCTTCAGTAATGAA 222999 Query 125535 TTTAT 125539 |||| Sbjct 222998 CTTAT 222994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740368412403480