Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq35982 156 3e-33 >seq35982 Length=112201 Score = 156 bits (172), Expect = 3e-33 Identities = 181/242 (75%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||||||| || |||||||| || || ||||| || |||||||| || | Sbjct 104418 CCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTC--TG 104361 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||||||||||||||| | || | |||||| || || | Sbjct 104360 ACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAG 104301 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| ||||| || |||||| ||||||| |||| || || || | ||||| Sbjct 104300 GAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTA 104241 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATA 15374 | || | ||| || ||||| |||||||| ||||| ||||| || ||||| | | || ||| Sbjct 104240 CTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCATCTGTAAAGATA 104181 Query 15375 AA 15376 || Sbjct 104180 AA 104179 Score = 127 bits (140), Expect = 1e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| || || |||||||| || || ||||| || |||||||| || | Sbjct 104646 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTC--TG 104589 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||||||||| ||||| | || | |||||| || || | Sbjct 104588 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104529 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| |||||||| || || || ||| ||||| |||| || || || ||| Sbjct 104528 GAATACCTTCTTTATCTTGGATCTTAGCT-TTTACGTTTTCGATAGTGTCAGATGGTTCC 104470 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | ||||| ||||| ||||||| |||||| |||||||||||||| Sbjct 104469 ACTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 105102 CCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCG-- 105045 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||||||||| ||||| | || | |||||| || || | Sbjct 105044 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104985 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| |||||||| || |||||| ||| ||||| |||| || || || ||| Sbjct 104984 GAATACCTTCTTTATCTTGAATTTTAGCT-TTTACGTTTTCGATAGTGTCAGATGGTTCC 104926 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | || || ||||| || || || ||||| || |||||||||||| Sbjct 104925 ACTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCATA 104875 Score = 116 bits (128), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| || || |||||||| || || ||||| || ||||||||||| | Sbjct 105330 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATC--TG 105273 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||||||||| ||||| | || | |||||| || || | Sbjct 105272 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 105213 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| |||||||| || || || ||| ||||| |||| || || || ||| Sbjct 105212 GAATACCTTCTTTATCTTGGATCTTAGCT-TTTACGTTTTCGATAGTGTCTGATGGTTCC 105154 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | || || ||||| || || || ||||| || |||||||||||| Sbjct 105153 ACTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCATA 105103 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| || || |||||||| ||||| ||||| || |||||||| || Sbjct 104874 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCG-- 104817 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||||||||| ||||| | || | |||||| || || | Sbjct 104816 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104757 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| |||||||| || || ||| ||||| |||| || || || ||| | Sbjct 104756 GAATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCA 104697 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || || ||||| || || || ||||| || |||||||||||| Sbjct 104696 CTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCATA 104647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | || |||||||||||||| || ||||| || |||||||| | || Sbjct 105904 CCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGT--CTG 105847 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||||||||| ||||| | || | |||||| || || | Sbjct 105846 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 105787 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATC 15303 |||| |||||||| || |||||| ||| ||||| |||| || || || Sbjct 105786 GAATACCTTCTTTATCTTGAATTTTAGCT-TTTACGTTTTCGATAGTGTC 105738 Score = 87.8 bits (96), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 |||||||||||||| ||||| | || | |||||| || || ||||| |||||||| Sbjct 105486 TCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTA 105427 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| ||||| |||| || || || ||| || || | || || Sbjct 105426 TCTTGAATTTTAGCT-TTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTAT 105368 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| || ||||| || |||||||||||| Sbjct 105367 TGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCATA 105331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361850030378193