Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq35982 141 7e-29 >seq35982 Length=112201 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| || |||||||| |||||| |||||| || || |||||||| Sbjct 105103 ACCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGA 105044 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || ||||| || | |||||||| || |||| Sbjct 105043 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 104984 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| |||||| ||| || | | | ||| || | || ||||| Sbjct 104983 AATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCAC 104924 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| || || | || || || || |||||||| Sbjct 104923 TTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| || |||||||| || || |||||| ||||| || || || Sbjct 104647 ACCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGA 104588 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || ||||| || | |||||||| || |||| Sbjct 104587 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 104528 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| || || ||| || | | | ||| || | || ||||| Sbjct 104527 AATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCAC 104468 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| || || ||||| || ||||| |||||||| Sbjct 104467 TTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| || |||||||| || || |||||| || || || ||||| Sbjct 105331 ACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGA 105272 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || ||||| || | |||||||| || |||| Sbjct 105271 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 105212 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| || || ||| || | | | ||| |||| || ||||| Sbjct 105211 AATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCAC 105152 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| ||||| | || || || || |||||||| Sbjct 105151 TTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| || |||||||| || ||| |||||| || || || || || Sbjct 104875 ACCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGA 104816 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || ||||| || | |||||||| || |||| Sbjct 104815 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 104756 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| || || ||| || | | | ||| |||| || ||||| Sbjct 104755 AATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCAC 104696 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| || || | || || || || |||||||| Sbjct 104695 TTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||||||||| |||||||| || || |||||| || || || || || Sbjct 104418 CCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGAC 104359 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| |||| || |||||||| || ||||| || | |||||||| || |||| Sbjct 104358 AATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104299 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || |||||||| ||||| || || | | | ||| |||| || || || Sbjct 104298 ATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACT 104239 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | || ||||||||||| ||||| Sbjct 104238 TCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | ||||| ||||| || || |||||| || || || || || Sbjct 105904 CCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGAC 105845 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| |||| || |||||||| || ||||| || | |||||||| || |||| Sbjct 105844 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105785 Query 44015 ACACCTTCTTTATCTGAAATTTT 44037 | ||||||||||||| |||||| Sbjct 105784 ATACCTTCTTTATCTTGAATTTT 105762 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || |||||||| || ||||| || | |||||||| || |||| | |||||||| Sbjct 105488 CATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTT 105429 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| |||||| ||| || | | | ||| || | || ||||| || | || | Sbjct 105428 TATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTA 105369 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || || | || || || || |||||||| Sbjct 105368 TTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354455157384804