Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq11254 324 1e-83 seq45074 118 9e-22 >seq11254 Length=169933 Score = 324 bits (358), Expect = 1e-83 Identities = 604/880 (69%), Gaps = 18/880 (2%) Strand=Plus/Minus Query 12840 TATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTT 12899 ||| || ||| || ||| |||||||||| | || || |||||||||||||| |||| Sbjct 70975 TATCTGTCATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTT 70916 Query 12900 TTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT 12959 | ||||| | || || || ||||| |||| || |||||| |||| || ||||| Sbjct 70915 TGCCTTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTT 70856 Query 12960 TACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAAT 13019 | | || ||| | || |||||| || ||||| || |||||||| ||| | Sbjct 70855 CATAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGG 70796 Query 13020 CACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATAT 13079 ||||||||| || | ||| || || | ||||| || ||||| | || |||||| Sbjct 70795 TGTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCA 70736 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTT--GAT--AGA 13135 ||| || || || || ||| | | | | ||| |||| ||| | | || Sbjct 70735 AAACGGCATCCGACACGAT--CTCGTGTACCCTATTCTGC--GAGGGTTTATGCTTCAGG 70680 Query 13136 TGCT---TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 || | | || | | || ||||| | | |||| || |||||||| ||||| |||||| Sbjct 70679 TGGTCGTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGC 70620 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 ||||| || |||| ||||||||| || |||||||| || | |||||| || |||||| Sbjct 70619 TCGTTGCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCA 70560 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || ||| ||||| || || ||||| || | ||||| |||| || | | || | Sbjct 70559 AAACTACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAA 70500 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 || || | | |||||| ||| ||||||| || || || | | |||||| Sbjct 70499 TTAGAATCAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGT 70440 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTAT 13430 || ||||||||||||| | || | | ||| | ||| | ||| |||| |||||| Sbjct 70439 ATGGTTTCTATTGCGTTTAGCAACTGGTCTTTA--CGTACAGGATCTTTAATAAAAGTAT 70382 Query 13431 CTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAA 13490 |||||| ||||| |||||||| || || || |||||||| || || || || || |||| Sbjct 70381 CTATCATCAAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAA 70322 Query 13491 AACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAA 13550 || || | || |||| | ||| ||||| |||| || | ||||| ||||||||||| Sbjct 70321 AAGATTTGGCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAA 70262 Query 13551 CTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTT 13610 | || ||||| || |||||||| ||||| || ||| | ||| || || ||| |||| Sbjct 70261 CGATGCCGTCGCTTGCAGCAAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTCTTTTT 70202 Query 13611 CTGACAA---CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCC 13667 | ||| || ||||||| ||| |||| ||| || || ||||| || || |||| Sbjct 70201 CGTTCAATTTGTTCTGCCAATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCC 70142 Query 13668 AAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 || | ||||| | |||| ||| |||||| | ||||||| Sbjct 70141 AATACGAAGCCAGGGCCTGCTTGTACATCTTAAATATATC 70102 >seq45074 Length=316632 Score = 118 bits (130), Expect = 9e-22 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||| ||||| || || || || || || ||||| ||||||| ||||| ||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||| ||||| ||| || |||||||| ||||||||||||||||| || Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 13295 ATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTG-GCCCAGTTTG 13352 | |||| || || |||| | |||||| | |||||| |||| | ||||| | || Sbjct 223102 A-CAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCA-TTTCAGAGCCCAATCTG 223159 Query 13353 CTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 |||| | ||| || || ||| |||| || || || || || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Score = 104 bits (114), Expect = 2e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| ||| ||| ||||||||||| | |||||| |||||||||||||| ||||||||| Sbjct 220488 GACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCCT 220547 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 || | ||||| | |||||||||||| || || |||| Sbjct 220548 TCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTTT 220584 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 13414 GTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGC 13473 |||| ||| || || || || | || || |||||||| || || ||||||||||| || Sbjct 224456 GTCTTTAATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGC 224515 Query 13474 TATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||||||| ||||| |||||||| || || | |||| ||||| Sbjct 224516 TATTTGGAAGCCATAGAAACATCTTGCTTCAGTAGCCTGCACTTC 224560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430590698009346