Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq35982 145 7e-30 seq39591 100 3e-16 >seq35982 Length=112201 Score = 145 bits (160), Expect = 7e-30 Identities = 178/241 (74%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||||||| ||| ||||| || | || || || || || | | Sbjct 105114 AAAATTTGCATACCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATG 105055 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 |||||||| || ||| || ||| || | ||||| || ||||||| | | || Sbjct 105054 TTATAATCCGACAA--TGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTT 104997 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||||||||||||||||||||| || | |||||| || || ||| ||| ||||| Sbjct 104996 GCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGT 104937 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| || || |||||||||||||| ||||| || || || |||| Sbjct 104936 CAGATGGTTCCACTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCA 104877 Query 95007 T 95007 | Sbjct 104876 T 104876 Score = 129 bits (142), Expect = 5e-25 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||||||||| || ||||| || | || || || || || | Sbjct 104431 AAAAATTTGCATTCCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGAT 104372 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | | | ||| || ||| || | ||||| || ||||||| | | | Sbjct 104371 GTTGTAGTC--TGACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGT 104314 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| || ||||| || | ||||| ||||| || ||| |||| Sbjct 104313 TGCTGATCTGGAGGAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTG 104254 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || |||| ||||| ||||| || || || ||||||||||| |||||| Sbjct 104253 TCTGAAGGTTCTACTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGC 104194 Query 95006 AT 95007 || Sbjct 104193 AT 104192 Score = 127 bits (140), Expect = 2e-24 Identities = 174/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||||||| ||| ||||| || | || || || || || | | Sbjct 105342 AAAATTTGCATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATG 105283 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| | | | ||| || ||| || | ||||| || ||||||| | | || Sbjct 105282 TTGTAATC--TGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTT 105225 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||||||||||||||||||||| || | || || || || ||| ||| ||||| Sbjct 105224 GCTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGT 105165 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || |||| || || |||||||| ||||| ||||| || || || |||| Sbjct 105164 CTGATGGTTCCACTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCA 105105 Query 95007 T 95007 | Sbjct 105104 T 105104 Score = 123 bits (136), Expect = 2e-23 Identities = 173/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||||||| ||| ||||| || | || || || || || | | Sbjct 104658 AAAATTTGCATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATG 104599 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | | | ||| || ||| || | ||||| || ||||||| | | || Sbjct 104598 TTGTAGTC--TGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTT 104541 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||||||||||||||||||||| || | || || || || ||| ||| ||||| Sbjct 104540 GCTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGT 104481 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || || | || || |||||||| || | |||||| ||||| || |||| Sbjct 104480 CAGATGGTTCCACTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCA 104421 Query 95007 T 95007 | Sbjct 104420 T 104420 Score = 123 bits (136), Expect = 2e-23 Identities = 173/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||||||| ||| ||||| || | || || || || || | | Sbjct 104886 AAAATTTGCATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATG 104827 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || || ||| || ||| || | ||||| || ||||||| | | || Sbjct 104826 TTGTAGTCCGACAA--TGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTT 104769 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||||||||||||||||||||| || | || || || || ||| ||| ||||| Sbjct 104768 GCTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGT 104709 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || |||| || || |||||||||||||| ||||| || || || |||| Sbjct 104708 CTGATGGTTCCACTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCA 104649 Query 95007 T 95007 | Sbjct 104648 T 104648 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| || ||||||| | | ||||||||||||||||||||||||||| || | |||| Sbjct 105477 TGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATT 105418 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || || || ||| ||| |||||||| | || || |||| || || |||||||| Sbjct 105417 TTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTATTGTTTTTCCT 105358 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || || ||||| Sbjct 105357 GTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 98.7 bits (108), Expect = 9e-16 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||||||||| |||||||| || || | || || || || || | ||| || || | Sbjct 105905 TCCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTC--T 105848 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | | ||| || ||| || | ||||| || ||||||| | | ||||||||||||| Sbjct 105847 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 105788 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||||||||| || | |||||| || || ||| ||| |||||| Sbjct 105787 GGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTC 105738 >seq39591 Length=213653 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 ||||||||||||||| | || | || | |||||||| || || | |||||||||| Sbjct 29206 CTCCTCCTCTCAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGGATGTTATAATCGG 29147 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 || || | |||||||| |||||| || ||||||| ||||||||||||||||| | Sbjct 29146 ACAATGTCCTTCCATCCTCCAACTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGGG 29087 Query 94899 GAATACCT 94906 |||||||| Sbjct 29086 GAATACCT 29079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447873319754280