Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq49236 158 2e-34 seq57575 149 1e-31 seq12909 149 1e-31 seq55000 138 2e-28 seq32658 91.5 2e-14 seq2381 84.2 3e-12 seq8697 80.6 4e-11 >seq49236 Length=23454 Score = 158 bits (174), Expect = 2e-34 Identities = 183/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||| | ||||||| ||||| || ||||| || |||||||| || | | || Sbjct 1632 TCTTCGTGATTATGTCCAAGGTATCACAAAACCAGCCATTCGTCGTCTTGCCAGAAGAGG 1573 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| ||||||||||| |||| || || | |||| || ||||| | || Sbjct 1572 TGGTGTTAAACGTATCTCTGGATTGATCTACGAGGAAACCCGTGGAGTATTGAAAGTATT 1513 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | ||||||| |||||| || || || |||||||| || | |||||||| Sbjct 1512 CTTGGAAAATGTTATCCGTGATGCAGTCACATACACTGAGCACGCCAAGAGGAAGACTGT 1453 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| | ||||| ||||||||||| |||||| | | | ||||| | || Sbjct 1452 CACCGCCATGGATGTTGTCTACGCATTGAAACGCCAAGGCAGAACCCTGTATGGATACGG 1393 Query 16693 AAGTTAA 16699 | ||||| Sbjct 1392 AGGTTAA 1386 >seq57575 Length=773 Score = 149 bits (164), Expect = 1e-31 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||| |||||||| || ||||| ||||| ||||||||||| || | | || Sbjct 553 TCTTCGTGATAATATCCAAGGTATTACCAAACCAGCCATCCGTCGTCTTGCCAGAAGAGG 494 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || || ||| ||||||| ||| |||||||||| | |||| ||||||||| | || Sbjct 493 AGGTGTAAAACGTATCTCTGGTTTGATCTATGAAGAAACCCGTGGTGTTTTGAAAGTTTT 434 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | || |||| ||||| | ||| || ||||| |||||| | || || || Sbjct 433 CTTGGAAAATGTCATCCGAGATGCAGTTACCTACACTGAGCATGCTAAAAGGAAAACCGT 374 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||||||| | || || ||||||||||| |||||| Sbjct 373 TACAGCCATGGATGTTGTTTACGCATTGAAACGCCAAGGC 334 >seq12909 Length=686 Score = 149 bits (164), Expect = 1e-31 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||| |||||||| || ||||| ||||| ||||||||||| || | | || Sbjct 392 TCTTCGTGATAATATCCAAGGTATTACCAAACCAGCCATCCGTCGTCTTGCCAGAAGAGG 333 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || || ||| ||||||| ||| |||||||||| | |||| ||||||||| | || Sbjct 332 AGGTGTAAAACGTATCTCTGGTTTGATCTATGAAGAAACCCGTGGTGTTTTGAAAGTTTT 273 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | || |||| ||||| | ||| || ||||| |||||| | || || || Sbjct 272 CTTGGAAAATGTCATCCGAGATGCAGTTACCTACACTGAGCATGCTAAAAGGAAAACCGT 213 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||||||| | || || ||||||||||| |||||| Sbjct 212 TACAGCCATGGATGTTGTTTACGCATTGAAACGCCAAGGC 173 >seq55000 Length=192257 Score = 138 bits (152), Expect = 2e-28 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| | ||| |||||||| ||||| || ||||| || |||||||| || | ||| Sbjct 15101 CTTCGTGGTAATATCCAAGGTATCACAAAACCAGCCATTCGTCGTCTTGCCAAAAGAGGT 15160 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| ||||||||||| |||| || || | |||| ||| |||| | ||| Sbjct 15161 GGTGTTAAACGTATCTCTGGATTGATCTACGAGGAAACCCGTGGTGTACTGAAAGTATTC 15220 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | ||||||| |||||| || || || |||||||| || | ||||||||| Sbjct 15221 TTGGAAAATGTTATCCGTGATGCAGTCACATACACTGAGCACGCCAAGAGGAAGACTGTC 15280 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||| |||||||| |||| ||||||||| | |||||| Sbjct 15281 ACCGCCATGGATGCTGTCTTCGCATTGAAATGCCAAGGC 15319 Score = 134 bits (148), Expect = 2e-27 Identities = 178/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||| | ||||||| ||||| || ||||| || |||||||| || | | || Sbjct 36718 TCTTCGTGATTATGTCCAAGGTATCACAAAACCAGCCATTCGTCGTCTTGCCAGAAGAGG 36659 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| ||||||||||| |||| || || | |||| | ||||| | || Sbjct 36658 TGGTGTTAAACGTATCTCTGGATTGATCTACGAGGAAACCCGTGGAATATTGAAAGTATT 36599 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | || | ||||||| | || | || || || ||||| || | |||||||| Sbjct 36598 CTTGAAAAAGGTTATCCGTTTAGCAATGACATACACTGAACACGCCAAGAGGAAGACTGT 36539 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| | ||||| ||||||||||| |||||| | | | ||||| | || Sbjct 36538 CACCGCCATGGATGTTGTCTACGCATTGAAACGCCAAGGCAGAACCCTGTATGGATACGG 36479 Query 16693 AAGTTAA 16699 | ||||| Sbjct 36478 AGGTTAA 36472 Score = 118 bits (130), Expect = 2e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 |||| || || ||| ||| ||||||| |||| || || | |||| || ||||| || | Sbjct 2033 GTGGTGTTAAACGTATCTTTGGATTGATCTACGAGGAAACCCGTGGAGTATTGAAAATAT 1974 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 || | | | ||||||| |||||| || || || |||||||| || | ||||||| Sbjct 1973 TCTTGGAAAATGTTATCCGTGATGCAGTCACATACACTGAGCACGCCAAGAGGAAGACTG 1914 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 ||||| |||||||| | ||||| ||||||||||| |||||| | | | || || || | Sbjct 1913 TCACCGCCATGGATGTTGTCTACGCATTGAAACGCCAAGGCAGAACCCTGTACGGATTCG 1854 Query 16692 GAAGTTAA 16699 || ||||| Sbjct 1853 GAGGTTAA 1846 >seq32658 Length=134052 Score = 91.5 bits (100), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 ||||||| |||||| || || || |||||||| || | |||||||||||| ||||| Sbjct 89619 GTTATCCGTGATGCAGTCACATACACTGAGCACGCCAAGAGGAAGACTGTCACCACCATG 89678 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCG--TAAGATTT 16682 ||| | ||||| ||||||||||| |||||| | |||||||| Sbjct 89679 GATGTTGTCTACGCATTGAAACGCCAAGGCAGAATAAGATTT 89720 >seq2381 Length=490 Score = 84.2 bits (92), Expect = 3e-12 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || || ||||||||||| || ||||| || || | | ||| Sbjct 145 CTGCGTGACAATATCCAGGGTATTACCAAGCCAGCCATTCGTCGGCTTGCCAGAAGGGGT 204 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | |||||| | | || || || | |||| ||| ||||| | ||| Sbjct 205 GGCGTGAAGCGTATTTCTGGACTAATTTACGAGGAAACCCGTGGAGTTCTGAAGGTGTTC 264 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || || | ||| | || || || |||||||| || | || ||||| Sbjct 265 TTGGAAAATGTCATTCGCGATTCAGTCACATACACAGAGCACGCAAAGAGGAAAACTGTT 324 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || || || | ||| | ||||| | | | || || ||||| Sbjct 325 ACTGCCATGGATGTAGTGTACGCCCTCAAAAGACAAGGAAGAACACTGTACGGATTTGGC 384 Query 16694 AGTTAA 16699 ||||| Sbjct 385 GGTTAA 390 >seq8697 Length=53010 Score = 80.6 bits (88), Expect = 4e-11 Identities = 133/192 (69%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || || ||||||||||| || ||||| || || | | ||| Sbjct 5156 CTGCGTGACAATATCCAGGGTATTACCAAGCCAGCCATTCGTCGGCTTGCCAGAAGGGGT 5215 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | |||||| | | || || || | |||| ||| ||||||| ||| Sbjct 5216 GGCGTGAAGCGTATTTCTGGACTAATTTACGAGGAAACCCGTGGAGTTCTGAAGATGTTC 5275 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | || || | ||| | || || || |||||||| || | || ||||| Sbjct 5276 TTGGAAAATGTCATTCGCGATTCAGTCACATACACAGAGCACGCAAAGAGGAAAACTGTT 5335 Query 16634 ACCTCCATGGAT 16645 || |||||||| Sbjct 5336 ACTGCCATGGAT 5347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79007017384089