Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq32985 96.9 7e-16 seq6218 89.7 1e-13 seq15348 87.8 4e-13 seq44907 84.2 4e-12 seq11237 80.6 5e-11 >seq32985 Length=108651 Score = 96.9 bits (106), Expect = 7e-16 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 ||||||| || || ||| |||||||| |||| | ||||| | ||||| | || | Sbjct 34931 GATAAAACCAACTACGTTCTTCACTATCGAAATCTCAAACAGTATTTAGGGTATGGAATG 34872 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 | ||||| |||| | ||| | |||| |||||| |||||||||| | ||| Sbjct 34871 CGGTTAAAGAAGGTACATCGAGTAATTCGATTTACACAATCATTCTGGCTCAAACCCTAT 34812 Query 4591 ATCGATAAAAATACCGCA-TGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649 || || || |||| | || ||||| | || |||||| || || ||| |||||| Sbjct 34811 ATAGACTTTAACACCGAAATGAGGAAAAG-ATCTGCGAATGATTTTGAGAAAGACTTTTT 34753 Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAA 4691 ||| || ||||| ||| | ||||||||||||| |||||||| Sbjct 34752 TAAGTTGATGAACAATTCAATTTTTGGAAAGACAATGGAGAA 34711 >seq6218 Length=141040 Score = 89.7 bits (98), Expect = 1e-13 Identities = 208/309 (67%), Gaps = 15/309 (5%) Strand=Plus/Minus Query 4612 CGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTT 4671 ||||| ||| || ||||| || ||||| | |||| |||||||||||||| | | ||| Sbjct 90547 CGAAAGGAAGCCAAAAATGACTTTGAAAAGGATTTTTTTAAATTAATGAATACTTCCGTT 90488 Query 4672 TTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATA-TTTAAGAACAAAGTG 4730 ||||||||||| ||||||||| | ||||| | ||| || | || |||||| Sbjct 90487 TTTGGAAAGACTATGGAGAATCTGAGAAAAAGAATCGATGTACAGTTGGTGAACAA---- 90432 Query 4731 GCAAAGTCAATACAATGTATCGGATTTAGTATGTAGACCAAACTTCCACAGCCTTACAAT 4790 ||| |||| | | | | || | ||| ||||| ||||| ||| ||| Sbjct 90431 CCAA--TCAAAAGCCAGAA----AATTGGCCAGTAAACCAACTTTCCATGCATTTAAAAT 90378 Query 4791 TTTTGATGAGGATATGGTTATAGTTGAACT--TAAAAAAGCTAGAGTTTGCTTCAACAAG 4848 || |||| ||| | || ||| | | ||||| || | | | | || |||| Sbjct 90377 ATTCAATGAAGATCTTGTAGCAGTACATATGCTAAAACAG--AAACTCTATTTGAACAGA 90320 Query 4849 CCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCAT 4908 || |||||||| || ||| || ||||||||||| |||| | || ||||| || ||| Sbjct 90319 CCTATCTATGTGGGCTTTTCCATTTTAGATTTATCAAAAACATTGATGTATGATTTCCAT 90260 Query 4909 TACAATTAT 4917 ||||||||| Sbjct 90259 TACAATTAT 90251 >seq15348 Length=93745 Score = 87.8 bits (96), Expect = 4e-13 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 4480 AATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAG 4539 || ||||| |||||||| ||||||||| | | | ||| | ||| | |||| Sbjct 77525 AAATATGTAGTTCACTATCGAAATTTGAAGCTTTATCTAGCCCTTGGTATGCGACTTACT 77466 Query 4540 AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGA---T 4596 || || |||| || |||| |||| | || | ||||| || || || || || | Sbjct 77465 AAGATTCACCGGGTATTGACATTTCAACAGAGTCATTGGCTGAAGTCGTACATTGACTTT 77406 Query 4597 AAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTA 4656 || | || | | | ||| || ||||||| || |||||| ||||||||||| | Sbjct 77405 AACACTAACATAAGGGCAAAT---GCACAGAATGAATTTGAAAAAGACTTTTATAAACTG 77349 Query 4657 ATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 ||||||||||| ||||| |||||||| ||||| ||| | ||||| Sbjct 77348 ATGAATAATGCAGTTTTCGGAAAGACTATGGAAAATTTGAGAAAA 77304 >seq44907 Length=196139 Score = 84.2 bits (92), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 4620 AGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAA 4679 ||| || ||||| || ||||| | |||| |||||||||||||||| | || |||||||| Sbjct 93729 AGCCAAAAATGACTTTGAAAAGGATTTTTTTAAATTAATGAATAATTCCGTATTTGGAAA 93670 Query 4680 GACGATGGAGAATGTACGAAAATATAAAGATATATATTTAA-GAACAA 4726 || ||||||||| || ||||| | ||| | |||||| |||||| Sbjct 93669 AACTATGGAGAATCTATGAAAAAGGATCGATGTGCATTTAATGAACAA 93622 >seq11237 Length=137423 Score = 80.6 bits (88), Expect = 5e-11 Identities = 172/257 (67%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 4448 AAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGA 4507 ||||||| | ||| |||||| |||||| | || ||||| | || ||| || ||| Sbjct 107645 AAAAACTTATACCAAATCTGTATGATAAAGAAAAATATGTACTACATTATCGTAACTTGC 107704 Query 4508 AACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGC 4567 | | |||| | || || ||| | || || || ||| ||| || |||| | | Sbjct 107705 AGTTGTATTTAAAATTGGGATTAAAGTTAAAAAAGATTCACAGAGTTTTACAATTCAAAC 107764 Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGA 4627 || |||| | ||| || |||||| || || | | ||||| |||| || | Sbjct 107765 AAAGTTGCTGGTTGAAAGAATTTATCGACTTTAACACGGAAAAAAGAAAATTAGCAAAAA 107824 Query 4628 ATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGG 4687 || ||||||||||| || || ||||| | |||||||| |||| || || || | Sbjct 107825 CAGAATTCGAAAAAAATTTGTACAAATTGTTCAATAATGCAGTTTACGGGAAAACACTTC 107884 Query 4688 AGAATGTACGAAAATAT 4704 ||||||||||||||||| Sbjct 107885 AGAATGTACGAAAATAT 107901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97887638341442