Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq11254 179 4e-40 seq45074 104 2e-17 >seq11254 Length=169933 Score = 179 bits (198), Expect = 4e-40 Identities = 552/853 (65%), Gaps = 16/853 (2%) Strand=Plus/Minus Query 21179 CCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGAT 21238 ||||| |||||||| | || || || ||||| ||||| || || || ||||||| || Sbjct 70961 CCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAG 70902 Query 21239 ATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCT 21298 || ||||| |||| ||| |||||| || || | | ||| | | || || ||| Sbjct 70901 ATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTCAAATCT 70842 Query 21299 GATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCG 21358 | | | ||| || ||||||||||| || || || ||||| | ||||| || Sbjct 70841 GTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCA 70782 Query 21359 ATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACA 21418 |||| ||| || || | |||| |||||||| || |||||| | ||||| || Sbjct 70781 ATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGAC 70722 Query 21419 ATTATATTTATTATCCTAGATGTACTAGGGG----GATACAA-TAATTGTTTAAACATCA 21473 | || | || |||| | | | |||| | | || | | ||| ||| | | Sbjct 70721 ACGATCTCGTGTACCCTAT-TCTGCGAGGGTTTATGCTTCAGGTGGTCGTTGAAAAGT-A 70664 Query 21474 AACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTA 21533 || ||||| | | | || ||||||||||||||||| |||| || || || |||| Sbjct 70663 GGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTA 70604 Query 21534 AACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGA 21593 |||| ||||| | |||| || ||||||||||| |||| ||||| || ||||||| Sbjct 70603 AACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGA 70544 Query 21594 AAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCA 21653 | ||||| || || | |||||||| | | ||| | | | |||| || ||| Sbjct 70543 AGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGT 70484 Query 21654 ATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTT 21713 |||||| ||| |||||||| ||||| | | || ||| || || || || || | Sbjct 70483 GTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGT 70424 Query 21714 TTAAAAGATGAtttttttCATCTAC---ATCGGTTATGNNNNNNNNNNNNNNNNNACTAT 21770 ||| | || | ||| | ||| ||| | || || | Sbjct 70423 TTAGCAACTGGTCTTT---ACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGT 70367 Query 21771 ACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTG 21830 |||||||||| ||||| ||||| || || |||||||||||||||||| || | || |||| Sbjct 70366 ACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTG 70307 Query 21831 AACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGG 21890 | | || || || | |||| | || || | |||||| || || || || || || | Sbjct 70306 GAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTG 70247 Query 21891 CGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT-- 21948 | ||||| || |||| || || || | ||||| || || | ||||| || Sbjct 70246 CAGCAAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTCTTTTTCGTTCAATTTGTTCT 70187 Query 21949 -CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAG 22007 ||||||| | |||| ||| || || || ||||| |||||| | ||| | | Sbjct 70186 GCCAATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAATACGAAGCCAGGG 70127 Query 22008 CCTTTTTATACAT 22020 ||| || ||||| Sbjct 70126 CCTGCTTGTACAT 70114 >seq45074 Length=316632 Score = 104 bits (114), Expect = 2e-17 Identities = 119/157 (76%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACAT---TATCTTCtttttttGACATAATTCCCA 21182 |||| ||||||||||| | || ||| || |||| || | ||||| | |||| Sbjct 220441 TTTAGAAATCAGCATCCAGTGTGAATGAATGGGTATCACCTCCTCCAGACATTACACCCA 220500 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 | |||||||| || | |||||| ||||| ||||| || || |||||||||| ||| || Sbjct 220501 TCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCCTTCCAGTGAAATCT 220560 Query 21243 ATTCCATAAAATCAAATGGATTTT-CAGATT-TAAAT 21277 |||||||||||||||||| |||| || ||| ||||| Sbjct 220561 GTTCCATAAAATCAAATGGGTTTTCCACATTGTAAAT 220597 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||||||||| || | ||||||| || || | ||| ||||| | ||||| |||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||||||||| | ||||| || || || || || || ||||| || |||||||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 21620 ACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCC 21679 || | || || | || | | | ||| || ||||||||| ||||| | ||| Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 21680 TTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AAGA 21721 || ||||| | ||| ||||| ||||| || || || |||| Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAAGA 223204 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 21866 TTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATAT 21925 ||||||||||| ||||||||||| || ||||| |||||||| | || || |||| | Sbjct 225515 TTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATGT 225574 Query 21926 CGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCA 21985 | || | ||| |||| ||| ||| | | ||||||||||| ||||| |||||||| Sbjct 225575 CTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAATCAACTTCTTCT 225634 Query 21986 GTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATT 22045 | |||||||| || ||||| || ||||| ||| || || | ||| ||| Sbjct 225635 GCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAATT 225694 Query 22046 GGAAATATTACAAA 22059 || || | ||||| Sbjct 225695 GGGAAGACAACAAA 225708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531404982020520