Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11254 120 8e-22 seq66969 89.7 1e-12 >seq11254 Length=169933 Score = 120 bits (132), Expect = 8e-22 Identities = 364/548 (66%), Gaps = 26/548 (5%) Strand=Plus/Plus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||||||||| | |||||| || |||| || || |||| | | ||||| || ||| Sbjct 71946 GTTCCCATGTTGAAGGTGTTTAACGATACGGCCAGATACGCCAATCAGGGCGGC---AAG 72002 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 | | || || |||| ||||| || || ||| || ||| | ||||| || ||| Sbjct 72003 AGAATGGGAGCCATTGCCATGTACCTGGAACCTTGGCACCTCGACGTGTTTGACTT-CTT 72061 Query 363892 G-AGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACT 363950 | || ||||||||| ||||| || ||| | | || | || |||| || ||||| Sbjct 72062 GCAGTGGAAGAAAAACACTGGAAACGAAGAAGAGAGGGCGAGAGACTTGTTTTACGCACT 72121 Query 363951 TTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG 364010 ||| || | |||| ||||||||||||||||| | | ||| | ||| || | | | Sbjct 72122 GTGGATTCCAGACCTGTTTATGAAGCGCGTGGAAGAGGACAAGGACTGGACATTGATGTC 72181 Query 364011 CCCACACGAATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTG--CTCTATA 364067 || |||||||| ||||| || || ||| |||||||| || | || | ||||| | Sbjct 72182 TCCGGACGAATGTTACGGTCTCTCGGACTGT-TGGGGTGAGGAGTTTGAAGAACTCTACA 72240 Query 364068 CGAAAAGTATGAATCGGAGG-------GAAA--GGCTCGTAAGACAATTCCCGCACAGAA 364118 ||| | || ||| |||| | |||| | |||| | | | | ||| | | | Sbjct 72241 CGAGA--TACGAAGCGGACGACAGTAAGAAAATGAATCGT--GTC-GTGCGCGCGCGGCA 72295 Query 364119 GCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC-TATATGTTGTACA 364177 | |||| |||||| || |||||||| || ||||| || ||| || |||||||||| Sbjct 72296 CTTGTGGTATGCCATAATCAGTTCGCAGACGGAAACAGGCACTCCCGTACATGTTGTACA 72355 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAAC 364236 | || |||||| | || |||||||| || || |||| || ||| || |||||| Sbjct 72356 AGGACAACTGCAACGGGAAATCCAACCATCAACA-TTTGGGACCGATCAAGAGTAGCAAC 72414 Query 364237 CTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCG 364296 || || | ||| | || | || | | | | |||| | | ||| || || || || Sbjct 72415 CTGTGCGCGGAGGTCATACATTATAGTGACCGCCACGAAATCGGCGTCTGCAATCTAGCA 72474 Query 364297 TCGATCGC 364304 || ||||| Sbjct 72475 TCCATCGC 72482 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/140 (77%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTG-TGCAATCTTTTGGC 22558 |||||||| ||||| |||||||| ||||||||||| || ||||| |||||| |||||| Sbjct 70519 GCATTTGCCGTGGTAGAAGGCATCTTCTTTTCTGGTAG--TTTTGCTGCAATTTTTTGGT 70576 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 |||| ||||| | | ||||||||| ||||||| || ||| |||| || | |||| Sbjct 70577 TAAAGAAACGAGGTCTCATGCCGGGTTTAACGTTCAGCAACGAGCTAATCAGTAGGGATG 70636 Query 22619 AGGGTCTTCA-TACCGATTT 22637 | ||| | || || | |||| Sbjct 70637 AAGGTTTACACTATCAATTT 70656 >seq66969 Length=194959 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || || |||||| || || ||||||||| ||||||| || | || | ||| || Sbjct 44648 CGCAAAACAATTAAAGCTCAACAGCTATGGTACTCCATCATAGAGGCACAAACTGAAACT 44589 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || || || ||||||||||||||||| || |||||||| || |||||||| | || Sbjct 44588 GGTACTCCTTATATGTTGTACAAAGACCACTGTAACCGCAAATCTAACCAGCAAAATCTA 44529 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 || || ||| | || || |||||||| || ||| | ||||| Sbjct 44528 GGAACCATTAAATGTAGTAATCTATGTACAGAAATTGTAGAATA 44485 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| || ||||||||||| || |||||| ||||| ||||| ||||| || ||||| Sbjct 45592 AGGAGCTTTTGCTATGTACCTGGAGCCTTGGCATGCTGATATATTTGATTTCCTTGATTG 45533 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| ||||| |||||||| || | || | ||||| |||||||| | ||| | Sbjct 45532 TAAGAAGAACACAGGAAAAGAAGAGAACAGAGCTAGGGATCTATTCTATGCCATGTGGAT 45473 Query 363957 TTCTGACCATTTTATGAAGCGCGT-GGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCAC 364015 | | ||| ||||||||||| || | | ||| || | ||| | || | || |||| Sbjct 45472 TCCAGACTTGTTTATGAAGCGTGTAGAAAGCAATGGAG-AGTGGACTCTGATGTGTCCAC 45414 Query 364016 ACGAATGTCCAGGT 364029 | |||||||| ||| Sbjct 45413 ATGAATGTCCTGGT 45400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302108289216086