Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq35982 89.7 4e-13 >seq35982 Length=112201 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | || | |||| ||| || || ||||| || || ||||||||||| | | Sbjct 104418 CCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGAC 104359 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || ||||||||||| ||| | ||||| || || || || ||| Sbjct 104358 AATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104299 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || |||| ||| || | | | |||||| || || | Sbjct 104298 ATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACT 104239 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 104238 TCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | |||| |||| ||| || || ||||| || || ||||||||||| | | Sbjct 104646 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGAC 104587 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || |||||||| || ||| | ||||| || || || || ||| Sbjct 104586 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104527 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || || || ||| || || | | | |||||| || ||| Sbjct 104526 ATACCTTCTTTATCTTGGATCTTAGCT--TTTACGTTTTCGATAGTGTCAGATGGTTCCA 104469 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || |||||||| |||| |||||||||||||| |||||| Sbjct 104468 CTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | |||| |||| ||| || |||||||| || || ||||||||||| | | Sbjct 104874 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGAC 104815 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || |||||||| || ||| | ||||| || || || || ||| Sbjct 104814 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104755 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || || || ||| || || | | | |||||| || ||| Sbjct 104754 ATACCTTCTTTATCTTGGATCTTGGCT--TTTACGTTTTCGATAGTGTCTGATGGTTCCA 104697 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || || |||||||| || || |||||||| ||||| ||||| Sbjct 104696 CTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | |||| |||| ||| ||||||||||| || || ||||| || || | | Sbjct 105102 CCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGAC 105043 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || |||||||| || ||| | ||||| || || || || ||| Sbjct 105042 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104983 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || ||||| ||| || || | | | |||||| || ||| Sbjct 104982 ATACCTTCTTTATCTTGAATTTTAGCT--TTTACGTTTTCGATAGTGTCAGATGGTTCCA 104925 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || || |||||||| || || |||||||| ||||| ||||| Sbjct 104924 CTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404719832353270