Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq56612 138 8e-28 seq35982 136 3e-27 seq65844 113 3e-20 seq20808 98.7 7e-16 seq57176 96.9 2e-15 seq9175 87.8 1e-12 seq63699 84.2 1e-11 seq30253 84.2 1e-11 >seq56612 Length=27498 Score = 138 bits (152), Expect = 8e-28 Identities = 87/94 (93%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 7978 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 7919 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 7918 AATCCATTCATGCGCGTCACTAATTAGATGACGA 7885 >seq35982 Length=112201 Score = 136 bits (150), Expect = 3e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| | || ||||||||||| || ||| || || || ||||| | Sbjct 104422 CATT-CCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGT 104364 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| ||| | || ||||||||||| || ||||| || || ||||| ||||| | Sbjct 104363 CTGACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTG 104304 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | || ||||| ||| ||||| ||| ||||| | || ||| ||| | || Sbjct 104303 GAGGAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTT 104244 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | || |||||||| || |||| |||||||| ||||||||||| Sbjct 104243 CTACTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | ||| ||||||||||| ||| ||| || || || || ||||| | Sbjct 105104 TACCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCG 105045 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 105044 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104985 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || |||||| || || || | || ||| || ||| | Sbjct 104984 GAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCA 104925 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||| || ||||| || || | ||||| ||||| || ||||| Sbjct 104924 CTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | ||| ||||||||||| || ||| || ||||| ||||| || | Sbjct 104648 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTG 104589 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 104588 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104529 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || || || || || || | || ||| || ||| | Sbjct 104528 GAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCA 104469 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 104468 CTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | ||| ||||||||||| ||| ||| || || || ||||| || | Sbjct 104876 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCG 104817 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 104816 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104757 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || || || || || || | || ||| ||| ||| | Sbjct 104756 GAATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCA 104697 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||| || ||||| || || | ||||| ||||| || ||||| Sbjct 104696 CTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||||||| | ||| ||||||||||| || ||| || || || |||||||| | Sbjct 105332 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTG 105273 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 105272 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 105213 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || || || || || || | || ||| ||| ||| | Sbjct 105212 GAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCA 105153 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||| || ||||| || || | ||||| ||||| || ||||| Sbjct 105152 CTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||||||||||||| |||||||| || ||| || || || ||||| || ||| Sbjct 105904 CCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGAC 105845 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 105844 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105785 Query 38211 ACGCCTTCTTTGTCCATAATTTT 38233 | |||||||| || |||||| Sbjct 105784 ATACCTTCTTTATCTTGAATTTT 105762 >seq65844 Length=40002 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 39891 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGACTCGT 39950 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 39951 GTCAGTATTTAGCCTTA 39967 >seq20808 Length=30777 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 10612 CTCTATCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTTTCCGCTATCGGACTCAT 10671 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 10672 GTTGGTATTTAGCCTTA 10688 >seq57176 Length=110105 Score = 96.9 bits (106), Expect = 2e-15 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 84048 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGACTC 84105 >seq9175 Length=65522 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | | |||||| || ||||| || ||| || || ||||| ||||| || Sbjct 22650 ATTTCCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTC 22709 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 |||| | | || || | ||||||||| ||||| || | | ||||| || | Sbjct 22710 GGACAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGG 22769 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | || ||||||||| ||||| || ||||| | | |||||| ||| Sbjct 22770 TGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTC 22829 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || || || ||||| ||||| ||||| || || || ||||| Sbjct 22830 AACTTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| | ||| | || | ||| || || || || ||||||||||| |||| Sbjct 22880 TACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCAG 22939 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || || | ||||||||||||||| || | | ||||| || | | Sbjct 22940 ATAGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGTG 22999 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || ||||||||| ||||| || ||||||| | |||||| ||||| Sbjct 23000 GAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAA 23059 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || || || || || ||||| ||||| ||||| || ||||| Sbjct 23060 CTTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACGAAGATTTGCAT 23108 >seq63699 Length=46181 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||| ||||||| |||| ||||||||| |||||| ||||||||| || | Sbjct 41251 TCTCTCTCTTCAAAATTCTTTT-AACTATCCCTCACGACACTTGTCCGCTATCGGACTTG 41309 Query 20006 CGGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 41310 TGTCAGTATTTAGCCTTA 41327 >seq30253 Length=52010 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 19953 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAAT 20012 |||||||||||||||||||||||||||||||||||||| |||||||| ||| | | Sbjct 41833 CTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCTGCTATCGGACTCATGTCAGC 41892 Query 20013 ATTTAGCCTTA 20023 |||| |||||| Sbjct 41893 ATTTTGCCTTA 41903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334642780411163