Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11254 214 2e-50 seq45074 138 1e-27 seq66969 129 7e-25 seq36930 98.7 1e-15 >seq11254 Length=169933 Score = 214 bits (236), Expect = 2e-50 Identities = 527/790 (67%), Gaps = 21/790 (3%) Strand=Plus/Minus Query 32310 TTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCT-TCTTGAGACATAACTCCCAT 32368 ||| ||||||| || |||||| | ||| || | || | ||| | ||| || ||||| Sbjct 71012 TTTTTTTAAAATTCTTCATCTATCGTAAA-TGTTCGTGTATCT---GTCATCACCCCCAT 70957 Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||||| |||| ||| || | ||||| ||||| || ||||| ||||| | || || || Sbjct 70956 CTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTT 70897 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||||||| || ||||| | ||| || | ||||| | | ||| || | | Sbjct 70896 CTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATTCAAATCTGTCAG 70837 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 || ||| || || |||||||| || || |||||| |||||||| || || Sbjct 70836 CAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAG 70777 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 ||| || || | || | || | ||| |||||||| || | || || || | | Sbjct 70776 TTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACAC--- 70720 Query 32609 AGATCT----TACTGT-TTCTTCACTCGGTGGATACAATAAATGTT---TAAACATCAAA 32660 ||||| ||| | |||| | ||| || | | || | | || | | Sbjct 70719 -GATCTCGTGTACCCTATTCTGCGAG-GGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGG 70662 Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || | |||||| ||| || || ||||| |||| |||||| ||||| | Sbjct 70661 CAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAA 70602 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || || || || | |||||| || | ||||| ||||||||||| Sbjct 70601 CCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAG 70542 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTG--TCATGT 32837 || |||||||| | ||||| || | |||| | | || || | | | || ||| Sbjct 70541 ATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGT 70482 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| ||| ||||| | ||||||||| | || ||||| || || ||||| || || Sbjct 70481 ATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTT 70422 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 | | | || ||| | |||||||| | | ||||| |||| | || |||||| Sbjct 70421 AGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATT 70362 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || |||||||| ||||| || ||||||||||| || || | || || | || | Sbjct 70361 TCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAAC 70302 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || ||||| ||||||| | | ||||| ||||| || || || ||||| || || ||| Sbjct 70301 TGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCA 70242 Query 33078 AAAAACGCCA 33087 || || |||| Sbjct 70241 AAGAAAGCCA 70232 >seq45074 Length=316632 Score = 138 bits (152), Expect = 1e-27 Identities = 163/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || ||||| || | ||| || || || || || ||||| | || ||||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| ||||| || || || ||||| ||||| ||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 32803 CAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 | | || ||||||| ||||| | || | |||| |||||| || |||||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 | |||| ||||||||| |||||||| || || ||||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 >seq66969 Length=194959 Score = 129 bits (142), Expect = 7e-25 Identities = 175/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 62980 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGG 63039 ||||||||| ||| ||||| || |||||| || | | ||||||||||||| || Sbjct 45358 TGTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGG 45417 Query 63040 ACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCC 63098 |||||||| | ||||||||| | | ||| || || |||||||| | || ||||||| Sbjct 45418 ACACATCAGAGTCCACTCTCCAT-TGCTTTCTACACGCTTCATAAACAAGTCTGGAATCC 45476 Query 63099 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63157 | | || ||| |||||||| || | ||| | || || |||||||| ||||| ||| | Sbjct 45477 ACATGGC-ATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACAA 45535 Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216 || ||||| | | ||||||| |||||| || |||| ||| || || | | |||| || Sbjct 45536 TCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGG 45594 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| | ||||||||||| || |||||||| ||| | || || |||||||| |||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| ||||| ||||| || || ||||| |||||||||||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | |||| ||| ||||| | |||||| || | | ||| | || ||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || ||||| |||||||||||||| | || || |||||||| ||||| | ||| | Sbjct 30633 TACCTGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTAT 30692 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 ||| |||||||| || || ||||||||||| || || || ||||| || || | || | Sbjct 30693 AGATTCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAG 30752 Query 62311 ACTATTTCTAAGACC 62325 || ||||||| ||| Sbjct 30753 GCTGTTTCTAACACC 30767 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 |||||| |||| || || ||||| ||| ||||| || ||||||||||| ||||||||| Sbjct 38583 GATCCTTCATAGGTCTCATATGGCCCTAATTTCTCTGCAAGTTCACAACTGGCCTCTAAT 38642 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 ||| | | |||||| || || || | || ||||| | || |||| | || ||| Sbjct 38643 GCAGCAAAGTAAATGCAGTCAAATATTTCTTTGTTTAGTTTCTGGGCTTGCTCACTCTCA 38702 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || ||| | | | | ||| || || || || | ||| || || || || || |||||| Sbjct 38703 AAAGGAAACCTCATTAAAATGAAAGCATCAGCAAGTCCCTGCACTCCTATTCCAATAGGT 38762 Query 62603 CTATGTCTCTTATTAGA 62619 |||||||| |||||| Sbjct 38763 CTATGTCTAAAATTAGA 38779 >seq36930 Length=140287 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 156051 TTCCCGATTTTGTAGTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAG 156110 |||| || ||||| || | ||||| || ||||| | | |||||||| ||||||| Sbjct 114766 TTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAATAATGGGAGCAG 114825 Query 156111 AGTTTACACCTTCCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTA 156170 |||||| | ||||| ||||||||||| |||| ||||| || |||||||| | || Sbjct 114826 AGTTTAGTCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGATTTCCACGTATTG 114885 Query 156171 CTAGGATTAGAGAAGATAAAACGTGGAAA 156199 ||| ||||||| |||||||| ||| || Sbjct 114886 CTAAAGTTAGAGACGATAAAACATGGGAA 114914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633041352010800